Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  5.4 5.6 7.6 -3.2 104.5 104.0 -7.1
 LEU-108   GLY-109  2.3 2.7 22.2 -8.6 42.5 36.7 59.7
 GLY-109   ILE-110  3.0 3.6 6.6 -9.0 112.9 112.8 11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-210   ILE-211  4.4 4.6 -15.6 20.6 36.2 33.7 -11.0
 ILE-211   ASP-212  6.0 6.4 -3.3 -2.9 60.9 59.7 17.6
 ASP-212   SER-213  4.3 4.3 15.9 2.5 63.2 57.7 45.0
 SER-213   LYS-214  3.2 3.5 -13.9 52.8 97.9 100.5 64.2
 LYS-214   GLY-215  6.3 6.6 20.0 -17.2 39.9 60.8 13.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees