Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-275   ASP-276  18.1 18.0 -0.3 3.6 106.5 110.3 16.1
 PRO-284   LEU-285  21.7 21.8 25.9 4.5 138.8 128.7 -529.3
 LEU-285   ASN-286  20.2 20.2 -21.8 27.2 20.0 22.4 -2.7
 ASN-286   GLN-287  20.0 20.2 3.2 3.7 117.0 121.1 13.7
 GLN-287   ARG-288  17.4 17.8 -18.4 14.3 110.0 114.6 31.1
 ARG-288   LYS-289  15.8 15.9 -1.9 -1.3 144.2 136.8 -26.7
 LYS-289   LEU-290  15.3 15.4 8.5 -12.9 108.2 110.3 69.2
 LEU-290   VAL-291  14.4 14.6 4.6 -4.7 105.5 105.0 23.0
 VAL-291   ALA-292  11.4 11.5 1.8 -2.7 37.9 39.6 -126.3
 ALA-292   ARG-293  10.4 10.4 3.6 0.5 59.9 61.0 79.6
 ARG-293   ARG-294  10.6 10.6 6.0 -6.5 117.2 117.1 -6.3
 ARG-294   ALA-295  8.9 9.0 -0.4 3.0 93.8 94.0 119.7
 ALA-295   LEU-296  5.9 6.0 -5.4 6.4 153.0 151.5 -60.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-300   LYS-301  3.5 3.7 -9.6 -1.9 32.8 25.1 351.7
 LYS-301   GLY-302  3.6 4.0 -6.7 6.6 94.5 89.5 -86.4
 GLY-302   ALA-303  5.2 5.2 5.2 4.4 31.7 37.3 283.1
 ALA-303   VAL-304  5.2 5.0 -8.4 5.3 85.6 81.4 -16.2
 VAL-304   GLY-305  7.3 7.5 0.1 -11.7 28.4 26.5 -319.6
 GLY-305   ASN-306  6.9 6.9 -14.3 -20.5 92.8 98.5 -134.4
 ASN-306   VAL-307  9.7 9.3 -1.1 -58.3 88.8 121.7 -549.1
 VAL-307   GLY-308  11.2 9.9 -6.0 5.5 161.4 115.5 -177.4
 GLY-308   VAL-309  11.6 12.5 15.1 36.6 82.3 89.7 122.8
 VAL-309   GLY-310  15.0 15.3 22.5 24.2 45.6 43.0 973.2
 GLY-310   ILE-311  15.3 14.9 -13.1 8.2 69.3 69.1 147.8
 ILE-311   ALA-312  13.8 14.0 -13.2 -24.4 47.2 36.4 786.4
 ALA-312   ASP-313  10.9 11.3 26.6 -12.3 157.4 143.9 -294.3
 ASP-313   GLY-314  13.2 12.9 15.4 -11.5 133.6 149.7 -211.4
 GLY-314   ILE-315  13.1 13.5 13.4 -0.1 118.5 115.3 -274.7
 ILE-315   GLY-316  9.4 9.8 10.9 -4.6 174.3 167.9 -128.7
 GLY-316   LEU-317  10.0 10.0 7.2 -9.3 119.0 123.1 15.0
 LEU-317   VAL-318  12.8 12.7 5.6 0.4 89.0 86.8 -46.9
 VAL-318   ALA-319  11.5 11.6 -0.8 -2.9 49.9 52.9 27.3
 ALA-319   ARG-320  8.3 8.4 6.1 -5.7 158.1 162.4 -28.0
 ARG-320   GLU-321  10.5 10.3 3.1 1.0 100.4 100.0 -32.2
 GLU-321   GLU-322  13.0 12.9 -1.6 2.9 83.3 83.2 -19.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-329   LEU-330  6.6 6.7 -3.7 5.0 25.1 26.9 -14.0
 LEU-330   THR-331  8.7 8.7 0.1 -6.3 83.5 84.7 -17.1
 THR-331   VAL-332  12.1 12.1 12.4 -26.2 132.3 137.8 265.3
 VAL-332   GLU-333  15.0 14.9 2.5 -11.0 117.2 109.3 -126.3
 GLU-333   THR-334  16.7 17.0 11.2 0.1 71.8 71.9 80.1
 THR-334   GLY-335  20.2 20.3 -1.7 -1.7 152.0 158.4 -60.6
 GLY-335   PRO-336  19.4 19.5 0.5 -3.0 39.3 42.1 -48.8
 PRO-336   ILE-337  17.5 17.4 -10.5 14.0 83.1 87.6 -57.0
 ILE-337   GLY-338  14.0 14.1 -4.6 3.4 130.1 127.0 13.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-373   CYS-374  4.8 5.0 9.5 -11.6 105.0 97.8 329.3
 CYS-374   TYR-375  6.5 6.3 23.1 -7.2 114.5 121.1 -371.5
 TYR-375   LEU-376  6.7 6.6 -11.6 13.7 58.0 61.0 -148.7
 LEU-376   SER-377  9.1 9.0 -3.9 -2.2 125.9 129.3 -137.1
 LEU-376   SER-377  9.1 9.0 -3.9 -2.2 125.9 129.3 -137.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-376   SER-377  9.1 9.0 -3.9 -2.2 125.9 129.3 -137.1
 LEU-376   SER-377  9.1 9.0 -3.9 -2.2 125.9 129.3 -137.1
 SER-377   PHE-378  10.8 10.9 -14.9 17.5 157.0 154.7 185.0
 PHE-378   ALA-379  10.5 10.6 12.6 -9.6 59.0 58.8 93.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-413   PHE-414  2.8 2.7 -0.1 -1.9 68.9 64.8 37.3
 PHE-414   CYS-415  5.3 5.2 -1.2 0.0 100.0 97.5 28.1
 CYS-415   GLY-416  8.0 8.0 -2.7 8.1 57.0 57.4 -100.8
 GLY-416   THR-417  11.1 11.0 28.7 -30.2 111.1 109.9 57.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-443   ILE-444  8.2 8.2 12.1 -10.1 5.4 6.6 113.6
 ILE-444   ARG-445  8.0 7.8 -10.5 20.0 110.0 114.6 -44.4
 ARG-445   GLU-446  5.3 5.3 -2.7 -8.8 81.1 74.7 4.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-464   ARG-465  3.1 3.2 4.5 -6.8 94.0 96.7 53.8
 ARG-465   TYR-466  1.2 1.2 -5.6 3.5 66.1 69.6 -63.1
 TYR-466   ILE-467  3.7 3.7 8.3 -6.2 69.1 71.1 46.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-515   LEU-516  17.6 17.6 -3.2 -5.0 104.9 103.1 -59.7
 LEU-516   PHE-517  15.6 15.7 3.2 0.3 76.2 76.7 19.5
 PHE-517   ILE-518  19.0 19.1 -4.4 8.1 48.9 47.8 -49.6
 ILE-518   ASP-519  20.9 21.0 5.5 -1.9 129.7 126.9 28.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees