Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  8.0 7.6 2.3 6.4 110.2 111.8 5.1
 LEU-108   GLY-109  4.5 3.9 -13.9 23.3 138.3 138.5 26.7
 GLY-109   ILE-110  1.9 1.6 -41.1 28.5 62.6 67.0 27.4
 ILE-110   SER-111  3.5 3.1 0.5 -8.7 120.1 113.6 36.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-208   GLY-209  11.6 11.7 24.6 -29.7 98.6 92.2 -25.5
 GLY-209   LEU-210  10.3 9.5 8.2 8.4 104.3 112.4 -25.7
 LEU-210   ILE-211  6.9 6.3 3.9 13.8 157.5 157.6 -62.5
 ILE-211   ASP-212  6.0 6.2 -168.2 138.1 70.2 42.3 26.6
 ASP-212   SER-213  3.1 3.6 132.8 -98.2 70.9 60.8 77.2
 SER-213   LYS-214  4.4 4.0 -6.4 10.3 78.7 75.2 31.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-251   ARG-252  5.2 5.5 -10.6 -3.0 34.4 37.1 35.1
 ARG-252   GLY-253  5.2 5.4 -1.2 -17.0 54.7 48.0 39.3
 GLY-253   ASN-254  2.1 2.3 -14.3 28.7 23.9 28.2 -69.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees