3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-127   GLU-128  7.0 7.2 -3.5 2.6 108.1 106.1 41.0
 GLU-128   GLY-129  10.2 10.4 -5.4 5.7 126.5 123.3 -70.3
 GLY-129   LYS-130  9.2 9.4 8.5 -13.7 20.1 16.3 -118.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-150   ALA-151  5.7 5.7 -1.2 -1.7 129.9 132.2 -64.3
 ALA-151   SER-152  7.1 6.8 5.9 -4.9 64.7 68.1 -85.7
 SER-152   LEU-153  4.3 4.0 6.5 -7.1 44.1 44.0 45.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-157   ASP-158  2.3 2.0 -10.8 6.7 71.3 71.6 153.2
 ASP-158   VAL-159  5.0 4.9 0.6 -0.7 93.5 94.2 65.9
 VAL-159   TYR-160  5.9 5.6 5.5 -6.3 51.5 52.5 16.2
 TYR-160   VAL-161  7.1 6.8 5.4 -1.8 113.4 111.7 -68.6
 VAL-161   ASN-162  9.1 9.0 -0.5 2.3 139.8 140.9 95.5
 ASN-162   ASP-163  11.8 11.7 -5.2 9.4 68.7 67.0 -72.2
 ASP-163   ALA-164  14.1 13.9 -11.5 24.2 141.0 141.1 427.9
 ALA-164   PHE-165  15.3 15.0 0.7 -1.4 70.5 75.7 -66.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-166   THR-167  19.5 19.6 -8.5 11.2 37.2 37.7 -6.1
 THR-167   ALA-168  16.9 17.0 0.4 3.1 82.5 84.2 158.7
 ALA-168   HIS-169  17.6 17.9 -6.7 8.3 50.0 47.4 -40.0
 HIS-169   ARG-170  19.9 20.0 -14.2 20.1 34.4 40.9 -150.8
 ARG-170   ALA-171  16.9 16.8 -7.7 -6.0 102.9 103.9 -0.1
 ALA-171   HIS-172  15.1 15.3 -1.9 1.1 71.3 65.8 120.5
 HIS-172   SER-173  11.6 11.8 2.5 2.6 53.7 56.9 50.8
 SER-173   SER-174  8.6 8.6 -0.2 -3.2 163.6 163.8 -57.9
 SER-174   MET-175  8.1 7.9 0.4 -5.1 55.1 51.3 -150.1
 MET-175   VAL-176  11.7 11.5 10.4 -8.2 79.0 80.5 129.6
 VAL-176   GLY-177  12.6 12.6 1.0 -1.1 95.6 97.2 27.6
 GLY-177   VAL-178  9.8 10.0 1.9 4.3 46.9 48.4 172.3
 VAL-178   ASN-179  7.9 8.1 5.5 -1.8 56.3 60.3 124.8
 ASN-179   LEU-180  10.1 10.1 -7.1 -1.3 153.0 153.2 -232.5
 LEU-180   PRO-181  9.5 9.6 -1.7 3.3 125.1 125.8 15.4
 PRO-181   LYS-182  12.2 12.2 -20.7 20.0 117.9 114.0 -13.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-183   ALA-184  11.5 11.3 -0.6 2.9 59.8 60.8 -8.8
 ALA-184   GLY-185  12.6 12.4 -5.8 0.0 110.3 111.8 -126.1
 GLY-185   GLY-186  14.5 14.5 -10.8 2.3 48.8 45.9 295.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees