DNA Topoisomerase III
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-194
VAL-195
9.5
10.2
-30.7
24.7
59.2
73.3
6.7
VAL-195
GLY-196
6.5
6.6
21.9
18.3
41.3
33.5
144.7
GLY-196
ARG-197
3.2
3.6
-11.0
5.7
66.3
71.6
19.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-504
ARG-505
13.7
14.2
-20.4
16.1
169.9
169.4
-35.0
ARG-505
PHE-506
14.2
14.2
-26.8
20.0
123.9
111.8
-27.8
PHE-506
VAL-507
10.7
10.3
-14.5
47.4
83.6
79.5
-38.7
VAL-507
GLN-508
11.5
10.7
0.6
-1.0
59.3
32.7
-2.4
GLN-508
ASP-509
13.9
10.5
16.5
-34.1
123.5
85.6
36.1
ASP-509
LYS-510
16.0
13.9
15.7
-6.1
117.7
89.8
-15.7
LYS-510
ASP-511
18.9
17.1
0.9
3.6
173.4
143.1
-24.0
ASP-511
LEU-512
19.1
19.0
-15.0
12.1
62.0
39.0
25.6
LEU-512
LYS-513
15.4
16.4
-5.7
-3.4
91.7
96.5
-17.3
LYS-513
LYS-514
16.2
16.6
8.6
-0.2
141.0
99.9
-20.6
LYS-514
ILE-515
18.7
20.4
-7.9
-16.0
28.8
13.2
121.1
ILE-515
LEU-516
16.5
20.4
20.9
-6.3
91.8
120.9
-58.0
LEU-516
ARG-517
14.0
17.7
165.7
-0.2
97.0
88.3
-11.5
ARG-517
ALA-518
17.0
19.7
-153.0
4.9
19.9
114.1
351.0
ALA-518
THR-519
18.1
19.8
-7.0
8.0
48.3
58.5
6.2
THR-519
ASP-520
14.7
18.5
-17.4
-130.5
102.1
68.6
-37.9
ASP-520
GLY-521
14.7
15.4
97.5
149.0
54.6
64.7
-317.1
GLY-521
LEU-522
12.0
12.2
-21.7
-4.1
67.9
67.9
62.6
LEU-522
GLY-523
8.5
8.6
179.9
-149.2
132.4
151.7
-113.3
GLY-523
THR-524
8.0
8.7
33.3
-19.9
119.6
142.4
26.2
THR-524
GLU-525
10.9
10.5
-29.3
36.3
90.0
83.0
-21.9
GLU-525
ALA-526
14.0
13.7
-39.3
20.0
61.7
80.3
31.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-567
PRO-568
4.3
4.1
-9.1
15.6
25.3
32.8
-23.8
PRO-568
ASP-569
6.2
6.0
-24.3
12.0
71.8
70.4
31.9
ASP-569
MET-570
9.1
9.2
-12.2
-0.6
25.6
27.5
56.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees