Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-82   ASP-83  16.8 16.8 -0.4 -0.8 126.8 123.1 -28.6
 ASP-83   THR-84  14.1 14.2 -12.8 5.2 64.1 66.4 19.7
 THR-84   LYS-85  10.7 10.9 -14.5 1.5 119.0 122.3 -26.5
 LYS-85   GLY-86  7.8 8.7 9.6 7.5 66.8 74.1 25.5
 GLY-86   PRO-87  5.4 5.6 -12.0 6.1 97.3 87.8 -5.7
 PRO-87   GLU-88  1.9 2.0 68.3 -11.1 36.8 36.4 135.9
 GLU-88   ILE-89  2.8 3.5 -16.6 11.8 81.9 88.7 -13.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-178   LEU-179  3.7 3.9 28.4 -14.9 107.9 106.5 -4.4
 LEU-179   PRO-180  5.1 5.6 -2.0 -15.6 68.4 55.0 -19.1
 PRO-180   GLY-181  4.3 5.1 -150.8 -164.2 92.8 85.2 23.6
 GLY-181   CYS-182  7.6 8.9 -29.0 -7.8 125.7 155.7 -56.8
 CYS-182   ASP-183  8.7 9.1 158.7 -149.4 29.4 52.5 27.4
 ASP-183   VAL-184  8.9 9.5 28.3 -0.9 41.8 35.4 61.6
 VAL-184   ASP-185  6.7 6.9 2.4 -39.8 26.8 33.7 -91.9
 ASP-185   LEU-186  7.5 7.9 -30.4 56.7 122.7 143.3 67.8
 LEU-186   PRO-187  4.0 4.8 14.5 8.0 65.5 64.0 -8.8
 PRO-187   ALA-188  4.6 5.4 0.1 -8.7 109.9 114.6 -0.3
 ALA-188   VAL-189  6.8 6.8 24.2 3.4 70.7 71.8 72.9
 VAL-189   SER-190  5.9 5.6 5.6 10.1 50.3 65.2 16.3
 SER-190   ALA-191  2.6 2.8 -4.7 -1.6 143.7 157.2 -15.4
 ALA-191   LYS-192  2.9 3.3 0.4 2.9 102.8 92.6 11.6
 LYS-192   ASP-193  5.9 6.7 1.1 4.0 107.5 103.0 -8.6
 ASP-193   ARG-194  6.9 7.6 -3.9 11.5 140.3 145.9 18.8
 ARG-194   VAL-195  7.6 7.5 -7.2 -4.3 121.0 121.7 -8.6
 VAL-195   ASP-196  9.0 9.3 18.0 -13.8 124.1 129.5 -17.2
 ASP-196   LEU-197  11.2 11.3 3.3 0.4 87.1 87.4 3.3
 LEU-197   GLN-198  12.5 12.4 2.3 -3.6 31.8 33.5 -0.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees