Mta/sah Nucleosidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-43   ALA-44  14.1 14.2 -1.6 1.0 172.7 177.6 -25.7
 ALA-44   LEU-45  12.7 12.8 -3.2 2.8 86.2 90.3 24.8
 LEU-45   LEU-46  13.1 13.0 -17.7 30.9 151.9 160.4 139.3
 LEU-46   LYS-47  12.1 11.6 -10.3 -12.4 80.3 89.3 -11.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-58   ALA-59  6.5 6.2 -6.8 5.2 136.2 133.6 -23.9
 ALA-59   THR-60  4.1 3.7 -1.0 -1.6 70.1 65.8 16.8
 THR-60   LEU-61  2.1 2.0 0.5 -1.7 105.9 105.7 -2.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-69   VAL-70  8.5 8.3 -3.6 1.8 72.2 73.5 15.0
 VAL-70   ILE-71  5.4 5.1 2.4 0.2 57.5 56.3 70.9
 ILE-71   ILE-72  4.5 4.5 3.5 0.0 130.2 126.4 -54.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-125   ILE-126  2.4 2.5 -1.4 -3.9 112.6 115.4 -56.1
 ILE-126   ALA-127  4.0 4.1 3.3 1.5 27.4 23.6 67.1
 ALA-127   ALA-128  3.5 3.4 1.1 7.9 92.0 90.8 6.0
 ALA-128   ALA-129  5.7 5.6 -11.7 7.7 70.4 82.2 34.8
 ALA-129   GLU-130  7.8 7.8 4.9 -7.2 44.9 38.1 -46.9
 GLU-130   ALA-131  8.7 8.3 5.5 6.7 45.2 47.8 102.0
 ALA-131   CYS-132  9.0 8.5 -4.8 3.3 70.2 76.3 16.6
 CYS-132   ILE-133  11.6 11.6 -8.4 13.6 87.9 103.5 40.3
 ILE-133   ALA-134  13.3 12.9 -2.4 -0.2 154.3 163.2 -37.9
 ALA-134   GLU-135  13.7 12.7 -9.6 1.3 106.8 100.8 -73.8
 GLU-135   LEU-136  14.9 14.3 -7.0 -1.6 67.6 69.4 -5.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-139   ALA-140  17.0 18.4 22.0 -56.1 133.9 142.8 314.4
 ALA-140   VAL-141  13.9 15.8 31.3 -14.0 80.3 80.6 54.9
 VAL-141   ARG-142  14.3 14.9 20.0 -21.6 127.3 124.6 -64.7
 ARG-142   GLY-143  11.8 12.0 -2.3 -7.4 67.4 73.0 38.0
 GLY-143   LEU-144  13.3 13.0 12.9 4.3 12.9 6.8 228.4
 GLY-143   LEU-144  13.3 13.0 12.9 4.3 12.9 6.8 228.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-143   LEU-144  13.3 13.0 12.9 4.3 12.9 6.8 228.4
 GLY-143   LEU-144  13.3 13.0 12.9 4.3 12.9 6.8 228.4
 LEU-144   ILE-145  14.2 14.0 -3.2 2.4 128.3 125.0 -55.1
 ILE-145   VAL-146  14.1 13.9 -2.8 8.8 148.0 151.9 60.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-193   ALA-194  14.3 14.2 32.9 -33.4 51.7 51.7 9.3
 ALA-194   ILE-195  17.7 17.8 9.9 11.4 109.2 115.5 -100.7
 ILE-195   SER-196  20.2 20.5 16.1 -31.7 105.4 115.6 188.6
 SER-196   ASP-197  23.1 23.2 16.1 -13.6 82.8 97.6 19.9
 ASP-197   VAL-198  25.2 25.1 12.4 5.7 68.8 66.1 138.1
 VAL-198   ALA-199  25.7 25.5 -103.9 80.6 62.6 43.9 138.5
 ALA-199   ASP-200  27.2 25.5 89.6 9.7 77.8 95.8 -88.2
 ASP-200   GLN-201  30.4 29.2 148.6 95.7 52.8 138.3 170.5
 SER-206   PHE-207  31.9 29.3 168.6 -3.1 117.0 107.3 1131.1
 PHE-207   ASP-208  29.6 26.2 14.3 -1.7 71.0 109.1 23.3
 ASP-208   GLU-209  29.8 28.6 9.8 -34.1 16.9 47.2 -288.0
 GLU-209   PHE-210  29.7 30.3 -1.3 -23.3 98.2 131.7 -193.5
 PHE-210   LEU-211  26.3 27.3 75.5 0.5 118.7 109.0 -397.1
 LEU-211   ALA-212  24.8 24.5 1.6 6.9 75.5 65.0 135.5
 ALA-212   VAL-213  26.5 25.5 -6.2 6.6 145.5 158.0 40.7
 VAL-213   ALA-214  25.0 24.9 16.3 -6.4 94.3 88.7 78.3
 ALA-214   ALA-215  21.5 21.6 -0.2 3.9 63.1 75.4 27.8
 ALA-215   LYS-216  20.8 20.8 0.7 5.4 58.0 41.9 83.5
 LYS-216   GLN-217  22.2 22.2 -4.4 -2.5 136.9 132.3 -72.1
 GLN-217   SER-218  20.1 19.8 -4.5 -1.3 72.3 72.4 45.2
 SER-218   SER-219  17.0 16.7 -3.3 2.1 78.2 85.1 7.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees