Atp-Dependent Phosphoenolpyruvate Carboxykinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-230   PHE-231  3.4 3.2 3.0 -3.4 142.6 141.8 -5.1
 PHE-231   GLY-232  4.0 3.8 -6.7 4.2 43.6 43.3 15.3
 GLY-232   LEU-233  4.6 4.5 1.4 -3.9 125.2 123.0 39.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-241   SER-242  9.5 9.1 -0.5 7.9 36.9 41.7 -144.7
 SER-242   THR-243  8.5 8.3 -13.4 5.2 47.5 45.6 171.6
 THR-243   ASP-244  11.9 11.7 10.9 -13.2 119.7 125.3 60.7
 ASP-244   PRO-245  11.8 11.6 -4.0 5.7 29.1 30.4 -76.6
 PRO-245   GLU-246  14.0 13.8 -9.0 4.6 40.0 41.2 82.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-341   ILE-342  3.5 3.6 -6.0 3.0 45.5 46.8 31.8
 ILE-342   PHE-343  2.7 2.8 -0.8 0.9 42.2 41.5 31.0
 PHE-343   PHE-344  1.4 1.5 3.5 -2.0 148.1 148.3 -40.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-389   PHE-390  3.5 3.5 -2.2 -0.5 46.1 47.2 14.2
 PHE-390   SER-391  4.7 4.6 12.4 -9.0 108.8 108.2 -5.6
 SER-391   ALA-392  7.6 7.5 -5.9 6.2 41.9 44.6 -13.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-419   ARG-420  8.1 8.3 -3.6 1.2 51.0 46.4 45.3
 ARG-420   VAL-421  8.0 8.1 1.2 -2.5 140.0 139.1 40.6
 VAL-421   TYR-422  6.7 6.8 -3.1 2.5 55.5 52.4 10.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-455   LEU-456  13.9 13.8 -2.2 3.1 146.8 142.7 24.8
 LEU-456   GLU-457  13.7 13.7 6.3 -7.4 99.8 101.1 35.0
 GLU-457   ASN-458  14.5 14.7 17.1 -11.3 101.0 102.5 -15.5
 ASN-458   VAL-459  17.8 18.0 -9.4 2.8 130.6 134.4 -55.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees