Autophagy 12B

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-57   VAL-58  10.1 10.0 -2.0 -1.9 121.7 117.9 12.8
 VAL-58   ASN-59  7.7 7.6 8.8 -18.1 102.8 105.2 41.3
 ASN-59   SER-60  4.0 3.9 -14.7 22.3 51.7 56.0 8.5
 SER-60   ALA-61  3.4 3.0 63.0 -63.8 85.9 78.1 23.0

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees