Probable Transcriptional Repressor Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-117   GLY-118  9.0 8.8 -3.9 9.6 23.5 16.2 -48.7
 GLY-118   VAL-119  8.8 8.8 11.9 -25.7 104.9 104.5 4.2
 VAL-119   GLN-120  5.7 5.6 0.5 1.4 58.6 53.1 15.9
 GLN-120   ALA-121  4.0 4.0 7.5 5.1 115.3 112.0 -31.0
 ALA-121   GLU-122  6.1 5.8 -7.6 7.9 32.6 46.4 -26.5
 GLU-122   VAL-123  4.3 3.6 -19.2 10.6 96.3 105.0 -23.7
 VAL-123   THR-124  1.2 1.4 17.3 -4.6 64.7 51.3 39.8
 THR-124   ALA-125  4.1 4.1 -21.5 6.8 58.9 61.6 7.1
 ALA-125   SER-126  6.5 6.7 -30.7 -1.0 60.7 62.1 92.7
 SER-126   VAL-127  6.4 6.8 75.0 -41.8 57.0 53.3 135.7
 VAL-127   GLY-128  9.0 9.3 4.5 -4.9 77.8 75.6 -27.4
 GLY-128   ASP-129  12.2 12.9 17.9 -34.8 36.0 31.4 -139.6
 ASP-129   TRP-130  11.5 11.4 15.1 -12.6 65.1 67.2 19.6

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees