Deoxynucleoside Monophosphate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-28   LYS-29  7.5 7.8 3.8 -2.4 48.0 46.0 81.6
 LYS-29   TYR-30  4.2 4.5 -15.3 9.0 104.9 101.9 8.2
 TYR-30   GLN-31  2.3 2.5 8.4 -0.4 59.4 60.3 22.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-160   LEU-161  10.1 10.3 -7.2 3.4 91.1 92.5 35.0
 LEU-161   ASP-162  13.7 13.9 -11.9 20.9 155.8 156.6 62.3
 ASP-162   LYS-163  14.0 14.2 -9.7 19.9 116.8 123.4 111.9
 LYS-163   PHE-164  12.7 13.0 10.7 9.8 123.1 114.9 -46.9
 PHE-164   ASN-165  14.0 15.4 -20.5 -17.6 113.3 123.0 -437.0
 ASN-165   SER-166  17.3 18.1 19.0 18.2 20.0 20.9 496.0
 SER-166   GLY-167  16.1 15.9 169.8 174.4 89.0 68.8 -151.4
 GLY-167   TYR-168  16.8 17.1 -28.0 18.0 82.1 83.3 -50.4
 TYR-168   ASP-169  14.1 14.2 -2.8 -6.1 37.3 38.0 156.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-171   ILE-172  8.9 9.1 4.7 -5.3 58.0 58.0 -7.0
 ILE-172   VAL-173  6.5 6.7 -9.6 5.1 97.5 97.3 24.3
 VAL-173   PRO-174  3.3 3.4 14.7 -9.8 79.0 75.7 31.2
 PRO-174   ASP-175  5.2 4.9 -6.0 5.0 116.5 116.9 -53.1
 ASP-175   THR-176  5.1 4.8 -1.5 -11.6 157.5 152.9 -202.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees