Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 MET-107   THR-108  7.4 7.2 -0.3 23.2 144.1 137.9 67.1
 THR-108   LEU-109  5.2 4.7 2.3 5.7 109.7 115.8 -48.4
 LEU-109   GLY-110  2.0 0.9 -20.3 24.9 135.7 140.0 18.4
 GLY-110   ILE-111  2.4 2.4 -6.2 -3.7 62.4 66.4 27.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-211   ILE-212  7.2 7.2 1.7 2.4 152.6 161.0 -17.5
 ILE-212   ASP-213  7.7 7.5 11.9 -19.5 134.5 126.7 29.6
 ASP-213   SER-214  4.3 3.8 -18.7 2.1 114.3 125.8 -18.7
 SER-214   LYS-215  1.8 1.8 -14.1 6.4 84.4 72.7 58.7
 LYS-215   GLY-216  2.5 2.6 22.9 -7.1 39.3 37.8 40.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-252   ARG-253  2.7 3.2 12.4 3.6 135.0 139.4 -54.7
 ARG-253   GLY-254  4.2 4.7 6.3 -84.5 136.1 132.1 231.4
 GLY-254   ASN-255  2.9 3.2 -20.1 9.4 36.6 74.7 42.0
 ASN-255   GLY-256  4.6 5.1 106.4 -153.5 85.4 44.9 -92.8
 GLY-256   CYS-257  8.1 7.8 56.3 14.8 86.6 110.8 -3.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees