Pentafunctional Arom Polypeptide

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-414   THR-415  17.1 17.0 -0.1 -0.1 119.9 119.9 0.2
 THR-415   VAL-416  13.7 13.6 0.0 0.2 77.1 77.7 -0.1
 VAL-416   THR-417  11.2 11.1 0.4 0.0 62.5 62.2 24.5
 THR-417   PRO-418  7.4 7.4 -1.4 1.7 92.0 93.5 -33.3
 PRO-418   PRO-419  6.9 6.9 -1.4 1.2 81.9 80.9 5.3
 PRO-419   GLY-420  4.8 4.9 -0.2 1.4 142.3 141.6 34.6
 GLY-420   SER-421  2.2 2.3 -0.4 0.9 140.1 140.3 32.6
 SER-421   LYS-422  3.4 3.5 -0.5 0.3 84.8 84.7 11.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-646   VAL-647  7.4 7.3 -0.2 -0.5 46.9 47.2 15.4
 VAL-647   GLU-648  4.1 4.0 -0.7 -0.4 81.2 81.4 6.1
 GLU-648   SER-649  2.7 2.6 0.8 -0.1 72.4 72.8 20.3
 SER-649   ASP-650  3.0 3.0 0.1 -0.5 147.7 148.1 16.6
 ASP-650   ALA-651  4.5 4.6 -0.1 0.1 61.4 61.0 -1.5
 ALA-651   SER-652  5.8 5.9 -0.8 0.1 77.9 77.3 0.0
 SER-652   SER-653  8.8 8.8 0.5 -0.4 34.9 34.9 8.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees