5'-Nucleotidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-327   ARG-328  11.9 12.2 -3.4 4.3 61.4 62.1 3.3
 ARG-328   ILE-329  9.3 9.8 -5.9 6.8 114.5 112.9 3.6
 ILE-329   LYS-330  6.6 7.0 -3.6 8.3 60.7 61.0 -3.0
 LYS-330   LEU-331  6.7 6.4 4.7 -15.3 156.2 153.6 6.3
 LEU-331   ASP-332  5.8 5.8 22.7 5.5 85.9 87.5 8.7
 ASP-332   ASP-333  3.3 3.9 17.9 -27.5 80.2 104.5 19.4
 ASP-333   TYR-334  2.2 0.3 51.4 -30.7 151.0 168.8 -7.7
 TYR-334   SER-335  3.9 0.9 40.6 -61.9 128.2 102.3 -1.2
 SER-335   THR-336  0.6 4.3 25.1 43.3 88.0 55.7 15.0
 THR-336   GLN-337  3.5 4.7 -47.7 -18.5 93.0 60.9 30.0
 GLN-337   GLU-338  5.9 6.7 -17.3 -12.1 30.2 36.8 29.9
 GLU-338   LEU-339  8.8 9.0 1.1 8.6 124.9 132.6 -6.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees