Siderophore Periplasmic Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-106   VAL-107  15.4 15.2 4.7 -8.2 93.1 95.7 26.0
 VAL-107   LEU-108  18.6 18.5 2.1 0.6 33.5 33.6 57.3
 LEU-108   GLU-109  18.6 18.6 0.3 1.8 90.9 86.8 -38.1
 GLU-109   ALA-110  15.4 15.4 0.5 -2.1 132.4 131.9 20.2
 ALA-110   GLY-111  16.8 16.9 -0.1 5.4 98.7 100.3 -115.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-119   PRO-120  27.9 28.1 1.9 11.7 53.9 48.2 440.0
 PRO-120   VAL-121  25.4 25.7 -21.8 13.0 147.8 141.6 -433.0
 VAL-121   ALA-122  23.9 24.5 9.2 -4.8 49.8 49.3 236.7
 ALA-122   THR-123  23.1 23.6 3.9 -5.9 73.0 74.1 7.8
 THR-123   LEU-124  20.2 20.7 7.9 -5.5 127.0 126.3 -151.8
 LEU-124   TYR-125  18.2 18.7 -4.4 -1.1 88.1 90.3 84.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-188   PHE-189  16.2 16.1 7.8 -2.8 49.7 47.3 94.8
 PHE-189   ASP-190  15.0 15.0 3.4 -15.9 67.7 68.4 12.3
 ASP-190   GLY-191  16.6 16.6 -3.5 -9.8 164.3 158.5 -364.6
 GLY-191   ALA-192  17.0 17.2 -3.1 14.2 127.1 130.3 665.6
 ALA-192   GLY-193  15.6 15.7 -8.7 0.7 109.6 106.2 -52.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-196   ARG-197  11.7 11.8 6.1 -1.5 83.2 85.2 97.7
 ARG-197   ASN-198  8.5 8.5 1.9 2.8 24.5 28.1 43.4
 ASN-198   MET-199  7.4 7.4 -5.7 3.7 127.8 124.4 -137.4
 MET-199   THR-200  10.7 10.7 -0.4 -2.3 99.4 96.6 -37.6
 MET-199   THR-200  10.7 10.7 -0.4 -2.3 99.4 96.6 -37.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-199   THR-200  10.7 10.7 -0.4 -2.3 99.4 96.6 -37.6
 MET-199   THR-200  10.7 10.7 -0.4 -2.3 99.4 96.6 -37.6
 THR-200   LEU-201  11.2 11.1 1.9 -1.3 108.6 106.8 -19.4
 LEU-201   GLU-202  8.0 8.0 -1.0 -1.3 18.6 18.4 127.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-212   ALA-213  11.0 10.9 5.2 -10.7 101.7 97.2 131.7
 ALA-213   GLU-214  8.3 8.2 8.7 -5.8 84.2 79.0 -172.4
 GLU-214   ALA-215  5.8 5.7 -3.2 5.4 44.4 45.6 -100.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-230   TYR-231  11.8 12.1 2.5 -2.6 41.8 35.5 30.0
 TYR-231   ALA-232  10.9 11.1 7.0 -9.1 103.3 102.9 -11.3
 ALA-232   ASP-233  13.7 13.9 11.4 -2.0 41.4 41.8 160.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-341   ARG-342  9.8 10.2 17.2 -8.9 19.3 17.0 305.1
 ARG-342   THR-343  11.7 11.9 10.8 -8.6 52.6 52.0 82.6
 THR-343   TYR-344  9.1 9.1 -2.3 1.8 68.6 65.3 -113.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-347   ASN-348  5.3 5.6 4.8 0.0 60.8 59.5 160.5
 ASN-348   ILE-349  3.5 3.3 -0.5 4.2 161.6 161.1 102.3
 ILE-349   VAL-350  5.7 5.7 5.3 -5.4 58.2 59.0 83.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees