Diaminopimelate Epimerase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-76   ALA-77  13.4 13.3 -10.2 4.8 157.0 153.3 -224.2
 ALA-77   ARG-78  11.4 11.2 0.8 0.7 70.8 72.2 121.4
 ARG-78   CYS-79  9.1 9.1 -5.6 4.8 101.1 103.9 -44.2
 CYS-79   PHE-80  12.5 12.5 -3.0 5.0 32.0 31.4 9.5
 CYS-79   PHE-80  12.5 12.5 -3.0 5.0 32.0 31.4 9.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-79   PHE-80  12.5 12.5 -3.0 5.0 32.0 31.4 9.5
 CYS-79   PHE-80  12.5 12.5 -3.0 5.0 32.0 31.4 9.5
 PHE-80   ALA-81  13.8 13.7 -3.3 -0.5 36.3 36.1 131.5
 ALA-81   ARG-82  10.9 10.9 -2.0 6.6 78.8 80.2 -76.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-91   LYS-92  10.6 10.7 -2.0 1.4 90.0 87.9 -77.1
 LYS-92   LYS-93  7.7 7.9 -8.0 -1.2 34.7 33.8 413.3
 LYS-93   ASP-94  4.8 5.0 9.8 -3.0 123.7 121.9 -177.3
 ASP-94   ILE-95  6.1 6.1 -7.8 1.6 95.9 93.4 -162.9
 ILE-95   SER-96  9.7 9.6 1.6 -6.5 115.7 115.4 187.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-98   THR-99  18.1 18.1 1.4 0.4 141.8 144.5 -129.1
 THR-99   GLN-100  19.2 19.0 -5.4 0.8 78.6 76.3 21.5
 GLN-100   LYS-101  22.5 22.4 -11.7 -32.1 84.5 87.9 152.8
 LYS-101   GLY-102  21.6 22.1 83.9 -16.5 41.8 71.0 1633.7
 GLY-102   ASN-103  19.5 19.2 -16.4 -34.6 134.1 155.1 -1767.8
 ASN-103   MET-104  16.8 16.9 -16.4 -11.6 74.9 87.8 -59.3
 MET-104   VAL-105  13.1 13.2 -1.2 11.9 145.4 137.4 270.9
 VAL-105   LEU-106  10.1 10.2 3.5 -2.2 119.0 117.8 16.8
 LEU-106   THR-107  7.5 7.4 1.5 1.2 50.6 50.9 66.3
 THR-107   VAL-108  4.0 4.0 -4.7 9.4 66.1 68.9 5.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-260   THR-261  5.3 5.3 -9.3 8.2 66.6 68.9 41.8
 THR-261   GLY-262  1.7 1.7 -0.1 1.2 133.0 134.3 20.1
 GLY-262   GLU-263  3.2 3.1 -2.9 -9.7 62.9 63.5 285.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees