Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-534   THR-535  6.9 7.2 -7.4 -1.8 42.7 37.8 38.6
 THR-535   LEU-536  4.7 5.6 -8.4 3.5 114.8 113.4 -5.7
 LEU-536   GLY-537  1.7 3.0 13.8 -20.5 140.2 139.3 20.0
 GLY-537   ILE-538  3.2 3.7 6.1 1.2 70.5 65.3 7.9
 ILE-538   SER-539  6.1 6.2 9.7 -9.5 68.6 65.7 22.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-757   LEU-758  11.4 11.8 7.6 -10.3 63.7 68.9 -17.7
 LEU-758   ILE-759  8.2 8.6 -10.0 24.0 156.4 154.1 83.0
 ILE-759   ASP-760  8.6 8.9 -32.3 25.3 127.7 137.0 -31.2
 ASP-760   SER-761  5.1 5.5 9.5 -0.8 123.2 115.6 -16.4
 SER-761   LYS-762  3.3 3.9 7.6 -18.2 74.1 79.1 19.2
 LYS-762   GLY-763  1.8 2.4 -12.1 -4.4 45.7 37.6 51.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees