Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-105   PHE-106  9.0 8.9 -1.8 5.5 109.2 109.8 69.6
 PHE-106   MET-107  6.0 6.0 -5.1 2.6 96.7 94.5 41.1
 MET-107   SER-108  7.4 7.3 -2.2 5.7 54.9 56.7 -61.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-172   THR-173  23.9 23.9 8.6 -6.7 74.9 78.3 -100.8
 THR-173   THR-174  20.5 20.6 0.5 3.0 62.4 65.5 141.7
 THR-174   ALA-175  19.3 19.3 -4.8 4.4 46.7 46.9 -116.0
 ALA-175   GLU-176  19.0 19.1 -0.1 -2.9 74.2 75.1 41.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-218   GLY-219  14.9 15.1 -1.2 -3.5 59.4 74.1 116.7
 GLY-219   TYR-220  12.2 12.1 -9.4 -2.8 37.8 34.8 352.4
 TYR-220   GLY-221  11.5 11.5 0.2 -0.6 75.5 77.5 -8.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-237   VAL-238  10.2 10.1 -1.7 -0.6 86.9 86.4 -107.5
 VAL-238   LEU-239  7.3 7.3 2.8 -3.6 145.5 144.3 95.7
 LEU-239   LYS-240  6.6 6.7 -0.1 -2.9 95.2 95.7 -56.4
 LYS-240   LEU-241  7.5 7.6 1.1 2.8 56.0 56.1 141.9
 LEU-241   ASN-242  5.1 5.2 -3.5 1.2 64.1 62.4 29.3
 ASN-242   GLU-243  2.0 2.2 -1.2 2.0 50.4 49.8 -84.6
 GLU-243   GLN-244  4.1 4.3 5.6 2.0 66.7 66.4 212.8
 GLN-244   GLY-245  6.7 6.8 -19.1 15.5 64.9 74.2 257.5
 GLN-244   GLY-245  6.7 6.8 -19.1 15.5 64.9 74.2 257.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-244   GLY-245  6.7 6.8 -19.1 15.5 64.9 74.2 257.5
 GLN-244   GLY-245  6.7 6.8 -19.1 15.5 64.9 74.2 257.5
 GLY-245   LEU-246  5.1 5.3 2.7 -4.7 165.6 164.9 214.4
 LEU-246   LEU-247  4.2 4.3 7.2 -4.1 103.9 105.3 -183.9
 LEU-247   ASP-248  1.0 1.2 5.4 -4.4 89.3 90.7 46.5
 ASP-248   LYS-249  4.7 4.9 -0.3 1.8 38.3 37.5 -183.4
 LYS-249   LEU-250  6.1 6.2 1.9 -2.0 146.2 145.7 113.6
 LEU-250   LYS-251  3.8 3.7 1.7 -9.8 90.4 93.6 20.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-252   LYS-253  9.1 9.0 -13.9 7.0 13.4 9.1 427.4
 LYS-253   TRP-254  8.0 8.1 -2.2 5.2 50.9 53.1 -130.6
 TRP-254   TRP-255  7.6 7.5 -3.1 2.3 100.2 101.1 110.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees