Adenosylhomocysteinase 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-362   VAL-363  15.4 15.1 1.6 2.3 87.4 76.1 -61.3
 VAL-363   THR-364  15.4 14.3 10.4 -3.3 30.6 8.1 59.5
 THR-364   LYS-365  15.8 15.0 18.7 -29.5 64.6 67.4 35.5
 LYS-365   GLN-366  12.9 12.7 -5.6 -1.0 65.0 75.8 127.0
 GLN-366   LYS-367  10.5 9.7 -7.4 -12.1 105.3 113.2 -131.3
 LYS-367   PHE-368  11.5 10.5 5.0 5.1 37.8 17.2 92.1
 PHE-368   ASP-369  9.9 10.1 9.1 -14.4 93.9 78.5 47.5
 ASP-369   ASN-370  7.1 7.3 -4.1 2.1 60.9 66.7 -22.9
 ASN-370   LEU-371  5.6 5.1 15.6 0.7 68.1 75.8 119.4
 LEU-371   TYR-372  8.0 7.5 -13.9 7.9 168.0 163.0 -116.3
 TYR-372   CYS-373  9.3 9.2 -2.3 14.5 131.3 137.2 106.7
 CYS-373   CYS-374  6.1 6.2 -21.3 13.1 82.0 96.3 41.8
 CYS-374   ARG-375  4.5 4.3 10.7 -11.0 78.8 79.7 -119.2
 ARG-375   GLU-376  8.2 8.1 1.9 9.7 13.4 9.2 175.6
 GLU-376   SER-377  7.8 8.0 -10.4 -7.4 105.8 114.1 -146.1
 SER-377   ILE-378  4.6 4.8 0.7 12.9 107.2 107.5 -160.2
 ILE-378   LEU-379  6.9 6.1 -15.9 11.9 135.1 131.4 -44.0
 LEU-379   ASP-380  9.5 9.1 11.4 -2.2 28.5 23.6 121.4
 ASP-380   GLY-381  7.1 7.0 7.9 5.8 91.7 91.5 -72.0
 ASP-380   GLY-381  7.1 7.0 7.9 5.8 91.7 91.5 -72.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-380   GLY-381  7.1 7.0 7.9 5.8 91.7 91.5 -72.0
 ASP-380   GLY-381  7.1 7.0 7.9 5.8 91.7 91.5 -72.0
 GLY-381   LEU-382  6.8 6.6 -18.6 12.7 89.8 85.5 15.5
 LEU-382   LYS-383  10.5 10.3 2.1 -9.6 153.3 152.5 41.3
 LYS-383   ARG-384  11.2 11.1 -0.4 -0.2 50.8 43.4 8.0
 ARG-384   THR-385  9.0 8.9 4.7 7.8 84.9 84.7 -83.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-525   LEU-526  2.8 2.9 -13.0 -13.3 60.8 53.0 112.8
 LEU-526   SER-527  4.9 4.2 -5.9 23.5 32.4 55.0 -102.5
 SER-527   CYS-528  6.7 7.2 -4.9 6.1 52.7 43.7 -70.5
 CYS-528   SER-529  5.2 6.6 -19.0 19.9 84.0 65.3 45.6
 SER-529   THR-530  1.8 3.1 33.2 14.4 103.4 102.1 -168.3
 THR-530   VAL-531  1.9 1.1 -117.3 149.8 124.6 140.9 307.9
 PRO-532   THR-533  7.8 7.6 21.0 -5.6 90.7 83.3 -22.6
 THR-533   PHE-534  10.6 10.5 -2.3 0.8 130.1 135.6 -4.6
 PHE-534   VAL-535  13.0 12.7 3.0 1.4 26.8 21.9 88.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees