D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-101   ALA-102  5.6 6.0 3.7 11.0 47.3 45.6 20.1
 ALA-102   SER-103  3.2 3.4 -2.2 19.0 121.7 133.3 16.9
 SER-103   ASP-104  0.6 1.9 -31.8 3.1 63.8 67.1 25.8
 ASP-104   ASN-105  3.1 3.7 7.7 7.9 58.7 58.7 22.5
 ASN-105   VAL-106  5.1 4.8 -4.8 -0.3 92.6 96.0 -8.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-232   ILE-233  4.8 4.7 16.1 -25.0 54.1 55.3 7.6
 ILE-233   ALA-234  3.0 2.9 11.5 -33.5 75.3 68.8 -6.3
 ALA-234   GLN-235  1.7 1.2 18.6 29.9 21.2 39.0 75.9
 GLN-235   LEU-236  3.2 2.8 -18.7 5.7 80.9 71.8 -1.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-262   VAL-263  5.0 6.2 -7.6 4.4 145.6 140.6 -8.5
 VAL-263   ASP-264  5.3 6.2 -4.0 12.2 132.9 142.8 11.7
 ASP-264   LEU-265  5.2 6.6 6.9 -16.7 50.3 56.1 -20.5
 LEU-265   LYS-266  2.9 3.9 3.5 28.2 33.1 25.6 52.3
 LYS-266   LEU-267  3.7 4.4 19.6 -3.2 53.1 55.9 29.9
 LEU-267   VAL-268  4.1 4.4 8.1 -2.0 31.0 42.2 5.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees