Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-207   ALA-208  5.4 5.4 3.9 4.0 24.8 28.9 434.6
 ALA-208   THR-209  3.2 2.9 6.2 1.7 22.8 26.7 -110.0
 THR-209   GLY-210  5.5 5.5 -5.0 -6.7 103.7 107.0 71.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-213   VAL-214  6.1 6.0 3.1 -1.6 101.1 100.1 -6.7
 VAL-214   TYR-215  8.4 8.5 3.6 -5.8 109.5 109.4 36.3
 TYR-215   TYR-216  7.0 7.2 7.0 -11.0 167.3 167.2 86.0
 TYR-216   VAL-217  5.5 5.7 7.8 -4.9 123.4 123.4 -87.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-372   ASN-373  4.5 4.4 0.3 -3.2 22.5 20.5 -17.5
 ASN-373   ALA-374  6.0 5.7 -0.1 -3.1 111.0 113.0 -3.7
 ALA-374   GLY-375  4.3 4.1 0.6 8.2 24.8 24.4 78.2
 GLY-375   GLY-376  2.6 2.4 -4.5 5.1 134.4 130.6 -7.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-397   VAL-398  8.9 9.0 1.4 -8.7 52.0 48.7 -136.4
 VAL-398   ASP-399  5.7 5.7 5.2 -4.8 44.0 45.4 44.6
 ASP-399   SER-400  5.4 5.5 9.0 -1.5 44.6 43.5 201.3
 SER-400   LYS-401  8.6 8.7 -11.4 -0.1 136.7 139.9 -245.3
 LYS-401   LEU-402  7.8 8.0 6.9 -5.7 50.6 52.3 8.2
 LEU-402   HIS-403  4.3 4.5 -0.7 3.2 135.5 134.9 116.1
 HIS-403   GLN-404  6.5 6.8 -2.0 7.9 139.9 139.2 15.9
 GLN-404   VAL-405  8.6 8.7 -12.3 -4.6 130.5 132.8 -150.9
 VAL-405   MET-406  6.3 6.7 10.6 -7.1 52.3 53.7 56.3
 MET-406   THR-407  3.5 3.9 9.7 -5.7 37.0 38.6 -61.5
 THR-407   ASP-408  6.6 6.9 1.1 3.7 44.3 44.5 108.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-409   HIS-410  3.8 4.0 -4.7 7.0 41.3 40.5 -70.7
 HIS-410   ASP-411  3.6 3.9 -2.1 -2.6 45.2 41.7 99.4
 ASP-411   GLY-412  6.7 6.9 -2.7 3.8 54.3 55.8 -16.4
 GLY-412   SER-413  6.2 6.6 -0.9 -1.3 47.6 47.8 48.8
 SER-413   ALA-414  2.8 3.1 -2.5 -2.0 37.2 35.1 8.0
 ALA-414   ALA-415  4.4 4.5 2.1 11.2 133.2 128.3 -149.0
 ALA-415   ALA-416  6.8 7.2 -14.7 2.0 61.1 53.1 155.6
 ALA-416   ALA-417  5.5 5.9 9.1 0.7 36.1 38.3 110.1
 ALA-416   ALA-417  5.5 5.9 9.1 0.7 36.1 38.3 110.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-416   ALA-417  5.5 5.9 9.1 0.7 36.1 38.3 110.1
 ALA-416   ALA-417  5.5 5.9 9.1 0.7 36.1 38.3 110.1
 ALA-417   GLU-418  2.4 2.8 -8.2 -3.4 130.2 136.4 -158.0
 GLU-418   ARG-419  5.4 5.7 -0.8 15.2 129.8 121.6 142.4
 ARG-419   TYR-420  7.1 7.7 -3.8 -22.2 136.7 139.4 -40.0
 TYR-420   GLY-421  4.8 5.4 30.8 -27.4 41.9 58.0 -29.8
 GLY-421   LEU-422  3.4 4.1 6.4 12.0 95.0 97.3 29.7
 LEU-422   GLY-423  1.3 1.6 -3.9 23.5 58.7 67.0 -41.8
 GLY-423   TYR-424  4.6 5.1 40.4 -47.8 164.6 178.5 119.0
 TYR-424   ASN-425  5.5 5.6 3.2 2.3 100.6 102.0 -98.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-430   ASN-431  3.8 3.7 -6.1 9.5 74.2 75.0 -111.6
 ASN-431   ILE-432  7.0 6.9 8.1 -13.4 108.6 107.9 72.6
 ILE-432   VAL-433  7.0 6.9 3.4 -4.3 46.2 50.2 21.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees