Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-110   ILE-111  3.7 3.7 10.3 -2.0 25.0 26.0 105.8
 GLY-110   ILE-111  3.7 3.7 10.3 -2.0 25.0 26.0 105.8
 ILE-111   SER-112  2.9 2.6 -9.2 6.8 113.6 112.3 32.7
 SER-112   ILE-113  0.3 0.5 -6.9 2.1 153.4 153.2 -85.1
 ILE-113   MET-114  1.3 1.4 -1.2 0.4 137.6 138.7 30.9
 MET-114   ILE-115  0.9 1.0 1.5 -6.0 39.3 40.2 -39.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-118   THR-119  8.9 8.8 -23.4 10.0 74.9 64.9 -50.4
 THR-119   PRO-120  7.8 8.0 -3.6 -4.2 46.2 45.2 126.9
 PRO-120   ILE-121  11.1 11.2 -1.7 2.5 28.9 26.6 -62.1
 ILE-121   GLU-122  9.5 9.4 7.0 -15.2 128.9 123.1 70.7
 GLU-122   SER-123  9.8 9.5 7.7 -0.4 148.3 154.3 -105.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-178   ALA-179  6.6 6.4 -5.3 6.5 9.4 8.7 15.2
 ALA-179   ARG-180  7.3 7.3 3.3 -5.2 101.1 104.0 27.9
 ARG-180   VAL-181  6.6 6.5 1.3 -0.3 83.7 87.4 -2.9
 VAL-181   ARG-182  3.0 2.9 2.0 -3.4 144.4 146.7 4.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-184   LYS-185  4.4 4.8 4.4 -1.3 80.6 73.7 48.0
 LYS-185   GLY-186  3.8 3.9 4.6 -1.1 137.6 129.4 -34.1
 GLY-186   LYS-187  5.1 5.3 1.1 -10.4 108.9 116.6 89.8
 LYS-187   TYR-188  7.4 7.5 7.9 0.9 134.4 138.0 -64.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-190   LEU-191  4.1 4.2 3.1 0.8 15.9 19.5 32.9
 LEU-191   LEU-192  4.5 4.3 -2.2 6.8 103.9 102.1 -0.5
 LEU-192   GLU-193  5.3 5.2 9.0 1.0 43.4 42.2 111.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  7.0 6.9 1.5 -1.6 98.3 98.0 9.8
 SER-217   LYS-218  3.3 3.2 -4.6 26.3 107.6 102.3 92.1
 ASP-216   SER-217  1.4 1.8 1.5 -1.6 98.8 99.0 -12.4
 ASP-216   SER-217  7.0 6.9 1.5 -1.6 98.3 98.0 9.8
 SER-217   LYS-218  3.3 3.2 -4.6 26.3 107.6 102.3 92.1
 GLY-213   ASN-214  5.9 5.8 -11.7 15.5 86.4 84.9 -71.8
 ASN-214   LEU-215  2.5 2.3 -1.4 -5.7 61.4 60.7 4.3
 LEU-215   ASP-216  2.5 2.5 1.4 2.6 156.3 149.9 -30.4
 ASP-216   SER-217  1.4 1.8 1.5 -1.6 98.8 99.0 -12.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees