Oligo-Peptide Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-246   ASN-247  7.2 7.0 -12.7 10.1 79.5 71.0 65.2
 ASN-247   MET-248  6.7 6.2 2.5 -0.1 170.4 168.3 -21.2
 MET-248   PRO-249  5.5 4.9 -13.6 16.5 56.8 59.2 13.0
 PRO-249   ILE-250  7.0 5.9 -10.7 16.8 59.0 67.5 17.6
 ILE-250   GLU-251  6.1 4.1 -20.0 0.7 11.6 16.9 72.8
 GLU-251   LEU-252  7.0 4.4 -18.0 61.1 71.3 77.9 -48.2
 LEU-252   PHE-253  5.0 4.3 -31.9 15.9 114.4 105.0 -72.7
 PHE-253   GLN-254  2.4 2.3 -5.2 1.2 56.8 53.1 -17.0
 GLN-254   LYS-255  1.0 1.7 0.4 5.0 128.4 134.4 -0.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-268   TYR-269  6.6 6.8 2.4 10.9 58.1 57.8 6.0
 TYR-269   LEU-270  3.4 3.7 10.4 10.2 50.7 43.6 46.2
 LEU-270   CYS-271  2.4 2.5 -6.2 -0.1 92.7 85.2 37.3
 CYS-271   THR-272  2.5 2.4 -5.6 6.1 65.9 67.5 -4.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-484   TYR-485  6.6 6.6 -0.8 0.5 130.4 132.3 16.0
 TYR-485   VAL-486  3.1 3.2 -3.1 5.9 100.1 99.1 24.5
 VAL-486   ASN-487  2.7 3.5 -7.3 5.8 91.5 92.4 28.4
 ASN-487   ALA-488  3.4 4.0 2.5 2.4 26.4 29.6 23.4
 ALA-488   ARG-489  4.1 4.8 0.9 2.1 79.7 77.6 -45.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees