Preprotein Translocase Seca Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-222   ILE-223  13.5 11.4 -7.6 -40.8 173.1 161.9 -68.6
 ILE-223   SER-224  13.4 10.3 -169.5 18.1 101.0 124.5 126.1
 SER-224   GLY-225  9.8 8.4 -54.6 -33.4 148.4 63.7 5.5
 GLY-225   GLN-226  8.8 4.8 -42.2 -15.5 139.8 129.3 -70.5
 GLN-226   ALA-227  8.0 3.7 102.6 17.6 78.8 111.3 -54.6
 ALA-227   ALA-228  5.9 1.5 -57.0 22.8 44.6 125.3 -21.4
 ALA-228   LYS-229  3.4 5.1 -169.8 -47.9 57.6 84.7 198.5
 LYS-229   SER-230  4.8 6.2 -135.3 33.2 112.3 99.6 -119.4
 SER-230   THR-231  7.6 5.2 160.6 41.5 121.7 73.1 -27.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-343   GLU-344  14.9 15.0 -61.6 -24.5 74.3 131.6 -9.7
 GLU-344   ILE-345  11.6 11.8 11.1 -3.5 41.7 111.9 -7.4
 ILE-345   GLN-346  9.1 8.8 78.1 -50.8 110.1 82.9 -35.6
 GLN-346   ASN-347  6.1 5.1 -60.5 -31.1 135.0 113.6 214.6
 ASN-347   GLU-348  3.3 4.6 -1.2 -101.9 85.1 170.0 -131.5
 GLU-348   SER-349  1.1 3.6 -84.3 -41.6 64.2 93.7 25.6
 SER-349   MET-350  3.5 5.9 11.4 -44.4 39.1 40.1 -38.5
 MET-350   THR-351  6.0 8.6 55.3 -113.7 80.1 118.8 25.2
 THR-351   LEU-352  8.8 12.1 173.1 -62.5 100.5 46.8 64.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees