Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-120   LEU-121  1.8 0.4 8.8 0.4 95.5 101.0 1.9
 LEU-121   SER-122  4.4 3.3 7.6 -17.9 52.0 59.8 -18.2
 SER-122   GLY-123  5.7 5.8 38.7 -1.8 25.1 13.7 86.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-166   GLU-167  1.6 2.5 0.5 13.7 2.8 6.1 30.5
 GLU-167   GLN-168  1.2 2.4 -4.7 10.1 115.3 112.9 -0.4
 GLN-168   THR-169  2.6 1.4 3.0 -19.6 98.3 98.5 23.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees