Trehalose Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   SER-108  8.1 8.0 0.7 -0.6 12.8 12.5 0.4
 SER-108   SER-109  8.9 8.9 1.6 -1.0 68.7 69.5 9.6
 SER-109   ASP-110  6.1 6.0 0.3 0.9 75.3 75.2 11.1
 ASP-110   HIS-111  8.0 7.9 -0.2 -3.1 35.4 35.9 -11.3
 HIS-111   PRO-112  7.7 7.6 2.4 -3.2 79.2 80.3 -19.8
 PRO-112   TRP-113  7.9 7.7 1.3 0.3 111.6 111.5 33.6
 TRP-113   PHE-114  5.0 4.8 -0.9 0.8 131.2 131.0 -11.9
 PHE-114   GLN-115  2.5 2.3 0.4 0.3 33.6 34.1 11.7
 GLN-115   ALA-116  4.5 4.4 -0.2 -0.4 78.7 78.2 -10.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-133   TYR-134  5.6 5.8 0.5 -0.1 60.7 60.6 21.2
 TYR-134   TYR-135  1.9 2.0 -0.3 -0.4 69.9 69.9 11.3
 TYR-135   VAL-136  3.6 3.8 0.1 0.0 89.0 88.8 -0.6
 VAL-136   TRP-137  7.4 7.5 0.9 -0.6 152.6 152.7 -1.1
 TRP-137   SER-138  9.1 9.2 1.1 0.5 91.3 92.2 11.8
 SER-138   ASP-139  12.5 12.7 0.1 -0.4 153.8 153.8 5.5
 ASP-139   GLU-140  14.4 14.5 0.8 1.1 130.5 130.2 -22.4
 GLU-140   GLY-141  16.4 16.5 -0.7 0.3 99.0 98.7 -0.2
 GLY-141   LYS-142  15.4 15.6 -0.3 -1.1 104.4 105.1 -10.8
 LYS-142   GLU-143  19.0 19.1 1.3 -0.9 18.2 18.1 3.9
 GLU-143   TYR-144  18.1 18.3 -0.7 1.3 102.4 103.2 9.6
 TYR-144   ALA-145  18.7 18.8 -0.3 -0.3 54.6 55.1 -2.2
 ALA-145   ASP-146  21.5 21.6 -0.4 1.1 112.6 112.7 4.4
 ASP-146   THR-147  23.5 23.6 0.0 -1.1 103.7 103.7 -3.6
 THR-147   ARG-148  21.2 21.3 -0.1 0.7 49.0 48.6 -0.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees