Protein (Pyruvate Kinase)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-86   PRO-87  10.7 10.2 3.2 -0.4 106.9 89.2 -5.8
 PRO-87   GLU-88  7.0 6.6 -13.7 52.7 147.8 150.7 157.3
 GLU-88   ILE-89  6.5 6.9 -19.3 5.0 88.2 79.8 0.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-175   GLY-176  10.5 10.4 12.5 1.2 47.9 59.0 19.2
 GLY-176   VAL-177  7.4 7.1 -1.9 8.7 82.5 80.4 9.6
 VAL-177   ASN-178  4.9 4.8 8.1 -9.2 61.5 67.1 9.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees