Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-284   LEU-285  13.4 13.3 16.2 2.0 145.2 139.9 -388.6
 LEU-285   ASN-286  11.5 11.2 -18.8 20.8 33.0 32.2 19.6
 ASN-286   GLN-287  12.8 12.8 6.8 1.3 131.1 134.9 -75.9
 GLN-287   ARG-288  11.3 11.6 -16.3 13.0 97.6 101.8 -1.9
 ARG-288   LYS-289  11.5 11.4 -0.8 -0.5 134.2 128.2 42.0
 LYS-289   LEU-290  9.4 9.0 -3.2 3.8 68.6 63.7 63.4
 LEU-290   VAL-291  6.8 6.8 -3.7 -1.3 60.1 61.3 15.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-416   THR-417  10.5 10.4 29.7 -36.1 105.5 99.7 109.5
 THR-417   LEU-418  10.6 10.4 1.4 1.9 167.3 167.6 -93.3
 LEU-418   THR-419  9.2 9.2 -6.4 -7.9 50.8 55.7 285.3
 THR-419   ALA-420  12.8 12.9 -1.1 -18.1 123.3 128.7 -260.9
 ALA-420   GLY-421  16.1 16.2 -5.4 4.2 77.7 70.0 67.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-429   GLY-430  16.2 16.0 5.9 -4.0 70.4 68.7 23.9
 GLY-430   LYS-431  12.7 12.5 11.1 -4.4 9.3 1.2 253.8
 LYS-431   LEU-432  12.7 13.1 -14.7 -1.1 103.1 107.3 23.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-433   ILE-434  15.6 15.6 4.7 -7.1 115.0 113.5 31.2
 ILE-434   VAL-435  15.9 15.9 -2.9 12.9 83.5 81.8 -43.3
 VAL-435   GLN-436  19.6 19.6 -5.5 -5.9 49.3 41.4 188.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-442   PHE-443  12.2 12.0 14.3 -10.1 61.1 66.7 42.7
 PHE-443   ILE-444  8.9 8.8 4.5 -4.9 10.5 9.9 29.1
 ILE-444   ARG-445  10.1 10.0 -1.1 7.0 122.9 127.9 15.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-467   THR-468  4.7 4.6 -1.4 1.8 83.0 82.3 72.3
 THR-468   GLU-469  5.9 5.9 -2.8 7.6 131.6 129.2 8.3
 GLU-469   ARG-470  7.3 7.2 -2.6 -1.2 70.6 71.2 11.1
 ARG-470   ALA-471  6.9 6.9 3.7 -0.4 115.1 116.4 -41.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-479   LEU-480  7.5 7.4 6.5 -5.4 22.8 22.0 88.3
 LEU-480   HIS-481  5.2 5.1 0.7 2.3 84.6 87.8 -22.9
 HIS-481   LEU-482  5.0 5.0 1.5 3.0 44.0 43.6 106.5
 LEU-482   ILE-483  3.1 3.2 5.9 -5.6 52.4 54.2 -102.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-484   ILE-485  4.3 4.7 -1.8 6.0 73.1 75.2 45.6
 ILE-485   ALA-486  6.0 6.3 2.2 -1.6 31.9 29.4 -24.7
 ALA-486   PRO-487  7.5 7.7 -3.3 1.6 87.6 85.9 48.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-503   VAL-504  1.4 1.1 0.3 -4.6 83.4 81.0 -27.9
 VAL-504   ILE-505  5.1 4.9 3.0 -4.2 146.0 145.0 74.9
 ILE-505   SER-506  6.5 6.5 5.2 -10.5 111.7 110.0 -36.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees