Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-155   ILE-156  9.9 9.8 -23.6 29.5 90.2 80.3 -26.2
 ILE-156   SER-157  7.2 7.1 -41.0 55.4 56.0 47.0 -77.3
 SER-157   CYS-158  3.9 3.8 -36.8 24.1 17.6 15.9 102.8
 CYS-158   ALA-159  5.5 5.1 3.3 -19.2 94.8 99.1 57.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-166   GLY-167  5.4 6.0 -33.4 17.7 57.9 56.0 90.9
 GLY-167   GLU-168  3.7 4.0 -5.6 10.9 45.8 53.9 -52.4
 GLU-168   SER-169  1.7 1.7 -1.0 -8.9 109.8 111.4 1.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-170   VAL-171  4.7 4.1 -1.9 -11.4 68.5 67.8 82.3
 VAL-171   GLY-172  3.7 3.8 19.0 -32.4 160.0 158.8 139.5
 GLY-172   LYS-173  4.4 4.4 49.8 -33.3 134.1 128.7 -150.3
 LYS-173   GLU-174  1.2 1.3 -15.4 19.2 40.8 36.5 -46.1
 GLU-174   VAL-175  4.4 4.4 3.1 -7.0 125.3 125.0 18.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-179   ILE-180  5.4 5.2 -9.2 7.5 130.3 135.3 0.1
 ILE-180   HIS-181  2.3 2.2 7.2 -1.5 36.8 40.5 55.9
 HIS-181   LYS-182  3.0 3.1 -15.4 18.0 127.5 125.6 11.4
 LYS-182   LEU-183  6.0 6.1 -17.6 11.5 124.8 128.4 -68.8
 LEU-183   SER-184  5.4 5.6 -8.9 16.4 128.1 128.4 50.1
 SER-184   ASP-185  2.1 2.1 -2.0 -4.1 156.6 157.4 -35.8
 ASP-185   ARG-186  1.0 1.2 8.8 -13.7 89.2 87.1 -4.8
 ARG-186   SER-187  3.7 4.0 -0.1 3.3 58.8 54.5 14.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-305   GLU-306  7.6 7.6 -11.5 8.4 22.2 13.8 -5.0
 GLU-306   ILE-307  7.3 8.1 -15.2 5.3 84.8 77.1 7.7
 ILE-307   PRO-308  5.6 6.1 -22.2 9.8 11.2 12.7 103.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees