D-Xylose-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-103   PHE-104  3.5 3.9 6.4 0.9 117.0 115.5 -10.1
 PHE-104   ASP-105  0.7 0.5 16.5 7.0 39.9 38.5 47.6
 ASP-105   ASN-106  3.0 2.8 -14.5 -2.6 79.4 82.6 25.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-240   TYR-241  7.5 7.5 -9.8 14.6 106.3 106.3 13.2
 TYR-241   LYS-242  3.9 4.1 -7.1 1.2 48.6 47.6 20.1
 LYS-242   PRO-243  0.9 1.5 28.8 -10.0 62.7 60.2 38.9
 PRO-243   ILE-244  2.2 2.4 -26.6 6.6 61.4 64.9 34.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-280   LEU-281  6.9 6.3 18.4 -18.2 117.5 124.0 14.4
 LEU-281   LEU-282  4.0 3.5 25.7 -32.5 145.1 149.4 20.3
 LEU-282   THR-283  4.9 3.8 5.2 -3.6 105.1 106.1 -12.2
 THR-283   PRO-284  6.2 4.7 2.1 -7.0 144.3 134.0 1.1
 PRO-284   ILE-285  4.7 4.0 -5.7 -11.5 47.3 53.6 41.3
 ILE-285   ASP-286  6.5 6.1 -0.9 0.7 72.9 73.6 8.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees