Glutamate Receptor Ionotropic, Kainate 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-171   GLN-172  5.7 6.5 160.9 66.9 145.4 47.6 48.8
 GLN-172   LEU-173  8.3 9.2 179.9 20.2 142.7 116.2 -145.1
 LEU-173   PRO-174  8.4 12.0 -157.3 -0.8 81.6 80.0 124.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-186   MET-187  8.4 2.7 162.1 -7.2 99.0 93.1 53.4
 MET-187   LYS-188  5.5 2.7 146.0 13.4 78.5 124.3 41.5
 LYS-188   ARG-189  8.9 3.7 153.9 -65.0 148.5 132.8 -56.7
 ARG-189   GLY-190  10.5 4.8 -170.8 33.3 43.4 49.3 95.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-193   HIS-194  8.4 6.0 -52.6 81.2 90.7 144.5 19.2
 HIS-194   VAL-195  7.8 6.9 -119.5 3.3 79.2 103.6 7.0
 VAL-195   ILE-196  5.1 6.6 -141.4 -42.6 63.3 36.6 -85.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees