Pyruvate Phosphate Dikinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLN-375   LEU-376  6.0 6.0 -1.4 10.2 81.5 78.6 -2.0
 LEU-376   LEU-377  2.7 2.7 0.3 -12.2 67.1 60.6 -6.6
 LEU-377   HIS-378  3.1 3.2 34.9 58.5 9.7 4.5 86.0
 HIS-378   PRO-379  3.3 2.9 11.2 -9.9 61.5 70.5 -10.8
 PRO-379   THR-380  1.0 2.0 -10.1 34.2 117.7 100.8 6.3
 THR-380   PHE-381  4.3 2.9 34.2 22.1 55.9 37.5 39.9
 PHE-381   ASN-382  5.8 5.1 -10.9 -41.3 88.0 78.7 2.0
 ASN-382   PRO-383  9.6 8.1 -1.9 13.2 98.5 104.4 -3.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-506   LYS-507  8.8 8.6 11.9 -4.1 136.7 140.0 -3.7
 LYS-507   GLY-508  7.2 6.9 24.0 -60.7 82.3 75.8 2.5
 GLY-508   ASP-509  3.7 3.2 5.7 28.7 56.1 24.0 21.2
 ASP-509   ILE-510  1.1 1.3 1.6 84.1 57.9 55.4 54.0
 ILE-510   GLU-511  3.3 4.0 29.2 7.4 25.8 46.6 31.3
 GLU-511   THR-512  2.3 5.2 -7.1 -53.9 140.8 162.1 -47.0
 THR-512   GLN-513  2.4 4.1 -33.8 -35.7 120.2 123.1 -34.8
 GLN-513   GLU-514  4.1 6.2 -35.8 42.5 121.8 147.9 -1.0
 GLU-514   ALA-515  4.0 5.9 -30.4 10.6 145.7 127.7 -9.6
 ALA-515   SER-516  2.4 3.8 63.7 -30.7 42.9 32.9 22.3
 SER-516   VAL-517  3.8 5.2 75.5 -50.5 23.9 45.6 18.1
 VAL-517   SER-518  3.9 3.6 -36.6 100.4 121.8 125.9 42.2
 SER-518   GLY-519  5.0 5.1 57.6 -61.3 13.8 21.0 -2.2
 GLY-519   SER-520  5.8 5.9 26.4 -29.3 65.4 58.4 8.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees