Oligopeptide Abc Transporter, Periplasmic Oligopeptide- Binding Protein
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-132
PHE-133
14.2
14.1
0.1
0.7
164.7
164.8
-16.9
PHE-133
GLN-134
12.3
12.2
-2.7
1.1
62.1
59.8
-50.8
GLN-134
PHE-135
11.4
11.3
3.9
-4.6
92.7
91.4
25.6
PHE-135
LEU-136
15.1
14.9
4.3
-5.8
145.1
143.3
87.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-258
PHE-259
16.8
16.8
7.6
-6.9
69.1
70.8
-86.0
PHE-259
ILE-260
13.9
13.9
2.0
-1.2
20.0
19.7
128.8
ILE-260
PRO-261
13.9
13.9
3.0
-2.6
61.1
61.7
-98.6
PRO-261
ASP-262
11.7
11.7
1.8
-0.6
84.5
83.9
-10.9
ASP-262
GLY-263
8.1
8.0
3.8
-4.0
19.9
20.4
-36.9
GLY-263
VAL-264
7.0
7.1
3.4
-0.9
74.8
75.1
189.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-465
ASN-466
10.9
11.1
-0.6
-5.0
34.5
33.0
179.0
ASN-466
ASP-467
8.6
8.7
-8.9
6.6
63.6
63.3
127.6
ASP-467
GLU-468
7.3
7.5
-0.6
2.7
69.6
71.7
-107.2
GLU-468
VAL-469
4.5
4.7
-4.2
1.9
136.1
133.2
18.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-477
SER-478
10.4
10.2
2.7
-0.1
59.0
55.2
197.7
SER-478
THR-479
11.5
11.4
6.0
-9.2
75.3
76.6
3.5
THR-479
LEU-480
14.2
14.2
-8.9
12.0
38.2
39.6
-176.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-484
ARG-485
11.3
11.3
-3.1
5.8
142.9
141.9
12.5
ARG-485
LYS-486
10.2
10.3
-1.8
1.8
97.3
95.0
-45.1
LYS-486
GLN-487
11.7
11.8
-2.5
4.2
55.4
56.4
-77.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-489
PHE-490
7.9
7.9
5.3
-4.9
74.8
73.2
-39.0
PHE-490
ARG-491
10.4
10.2
-0.4
0.4
112.0
110.6
61.4
ARG-491
ILE-492
8.0
7.9
2.3
-3.4
135.1
137.6
-77.1
ILE-492
GLN-493
6.4
6.4
-0.8
-1.3
62.2
61.9
60.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-509
HIS-510
9.9
10.0
6.8
-2.8
75.8
74.9
67.6
HIS-510
TRP-511
8.5
8.5
-1.0
3.4
175.8
177.4
57.4
TRP-511
TYR-512
7.8
7.8
-1.7
1.5
119.2
120.3
26.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees