Response Regulator Protein Vrar

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-125   PHE-126  10.8 11.0 -3.8 -5.7 102.4 105.9 -8.6
 PHE-126   GLU-127  9.6 9.2 -26.1 8.0 28.6 36.0 17.3
 GLU-127   PRO-128  10.5 9.8 7.2 -4.6 110.3 88.0 7.6
 PRO-128   GLU-129  7.7 6.8 -2.8 14.3 106.3 128.9 8.6
 GLU-129   VAL-130  8.6 9.1 -14.5 49.6 158.4 161.2 35.3
 VAL-130   LEU-131  7.5 8.1 -56.6 -1.0 102.0 101.6 -0.8
 LEU-131   VAL-132  4.8 4.2 13.5 -0.9 65.7 85.3 4.9
 VAL-132   LYS-133  2.0 6.0 0.8 -12.1 19.1 20.6 -14.2
 LYS-133   MET-134  4.3 7.8 13.6 10.9 47.8 44.2 27.7
 MET-134   ARG-135  4.2 4.5 -7.0 1.6 98.8 91.8 -6.0
 ARG-135   ASN-136  2.3 4.6 -4.0 -7.9 125.7 116.1 -6.1
 ASN-136   ARG-137  1.2 8.2 8.5 5.3 17.4 7.7 15.5
 ARG-137   MET-138  1.4 7.4 5.8 1.7 66.9 59.7 -0.3
 MET-138   LYS-139  3.2 6.1 10.3 -3.5 78.3 78.9 -10.4
 LYS-139   LYS-140  4.0 9.8 16.8 -63.5 31.2 32.1 -44.4
 LYS-140   ARG-141  2.9 11.0 115.8 -72.3 38.7 43.7 45.6
 ARG-141   ALA-142  2.4 8.3 -178.1 -32.0 103.9 132.4 -169.5
 ALA-142   GLU-143  6.1 8.6 179.6 4.2 61.3 77.6 14.5
 GLU-143   LEU-144  6.8 6.6 163.0 4.4 19.3 22.7 179.6
 LEU-144   TYR-145  4.7 4.4 10.0 -2.6 42.9 41.0 7.9

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees