D-Glyceraldehyde-3-Phosphate Dehydrogenase 4 (E.C.1.2.1.12)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-30   ASN-31  12.2 12.3 -0.3 -4.9 90.2 92.0 -51.7
 ASN-31   ASP-32  15.6 15.6 18.0 2.8 77.0 69.2 166.6
 ASP-32   LEU-33  17.0 17.0 50.5 -26.9 119.8 101.8 -163.6
 LEU-33   THR-34  20.5 20.6 32.8 -65.5 128.1 150.5 361.1
 THR-34   ASP-36  19.4 20.2 51.7 -39.5 158.8 142.0 -148.8
 ASP-36   ALA-37  19.3 19.0 12.7 4.4 100.1 96.1 -42.2
 ALA-37   ASN-38  15.9 15.5 -17.4 8.4 68.8 68.8 58.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-68   LYS-69  4.0 4.0 23.8 -15.7 121.5 126.5 -28.2
 LYS-69   GLU-70  6.4 6.5 18.9 -4.0 100.7 100.0 48.1
 GLU-70   ILE-71  9.1 9.1 22.4 -32.5 160.2 166.8 218.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-116   ILE-117  13.0 13.0 -1.8 -2.3 125.3 124.6 -14.0
 ILE-117   ILE-118  9.4 9.4 -6.2 11.9 90.8 89.1 -33.3
 ILE-118   SER-119  9.9 10.1 15.0 -1.8 86.8 88.4 62.9
 SER-119   ALA-120  7.5 8.1 -12.6 -0.6 121.8 131.6 -156.6
 ALA-120   PRO-121  9.1 9.2 7.0 -0.5 29.3 33.5 143.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-146   ALA-147  4.3 4.6 6.3 -2.6 56.6 56.8 60.6
 ALA-147   SER-148  5.0 5.3 -4.5 11.7 54.6 57.7 -68.4
 SER-148   CYS-149  6.6 7.1 1.1 -3.7 100.8 106.5 18.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-214   ALA-215  2.6 2.8 -3.3 2.4 52.0 54.3 120.2
 ALA-215   LEU-216  2.0 2.2 0.5 -8.4 59.6 65.7 -119.1
 LEU-216   VAL-217  4.3 4.3 6.0 -10.8 70.5 66.9 123.1
 VAL-217   LEU-218  2.7 2.9 21.8 -14.4 134.3 130.0 -103.6
 LEU-218   PRO-219  3.0 2.8 -4.8 4.7 34.1 30.2 -145.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-319   ARG-320  3.0 2.9 0.5 -3.4 135.4 135.5 124.3
 ARG-320   VAL-321  1.9 1.6 5.4 -0.6 78.6 78.4 -8.7
 VAL-321   VAL-322  2.2 2.2 -5.5 2.7 130.7 129.0 -91.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees