Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-275   ASP-276  21.0 21.1 -2.2 21.9 56.3 60.5 -339.1
 PRO-284   LEU-285  27.0 26.7 -13.2 -4.9 132.3 129.7 -415.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-286   GLN-287  26.0 25.9 3.8 -15.3 124.9 121.9 170.1
 GLN-287   ARG-288  23.9 23.7 12.9 -5.7 74.2 80.0 -99.3
 ARG-288   LYS-289  21.4 21.3 4.0 -0.2 39.4 33.1 18.3
 LYS-289   LEU-290  20.9 20.8 0.2 1.7 101.5 99.0 -50.9
 LEU-290   VAL-291  20.8 20.7 -1.9 -0.3 66.6 67.2 -0.2
 VAL-291   ALA-292  17.8 17.7 6.4 -6.6 49.6 49.4 -19.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-308   VAL-309  12.9 12.7 -7.5 -47.5 95.1 80.7 -11.1
 VAL-309   GLY-310  16.6 16.0 -21.6 -25.4 57.6 57.3 754.8
 GLY-310   ILE-311  17.5 17.9 15.0 2.9 53.0 56.7 359.7
 ILE-311   ALA-312  18.2 17.8 11.8 15.8 31.2 45.8 706.5
 ALA-312   ASP-313  15.5 14.6 -18.2 4.4 133.3 147.2 -273.1
 ASP-313   GLY-314  15.9 16.2 -19.4 11.5 156.0 149.2 -273.3
 GLY-314   ILE-315  17.4 17.3 -6.6 -6.8 122.0 124.1 -279.0
 ILE-315   GLY-316  14.1 13.9 -9.9 3.6 156.8 160.4 -163.8
 GLY-316   LEU-317  13.7 13.6 -0.3 0.6 47.0 49.8 5.9
 GLY-316   LEU-317  13.7 13.6 -0.3 0.6 47.0 49.8 5.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-316   LEU-317  13.7 13.6 -0.3 0.6 47.0 49.8 5.9
 GLY-316   LEU-317  13.7 13.6 -0.3 0.6 47.0 49.8 5.9
 LEU-317   VAL-318  16.9 16.9 -0.9 1.6 79.1 77.7 -51.1
 VAL-318   ALA-319  16.4 16.4 -3.3 2.2 51.6 48.4 17.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-324   ALA-325  9.7 9.9 -6.4 -0.1 65.3 66.3 63.3
 ALA-325   ASP-326  9.7 9.9 5.2 -1.9 72.8 71.0 26.8
 ASP-326   ASP-327  7.1 7.3 1.4 -5.1 103.1 100.9 9.7
 ASP-327   PHE-328  4.4 4.6 3.4 -6.3 147.1 148.0 99.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-329   LEU-330  6.2 6.3 3.1 -2.1 18.1 17.9 -23.8
 LEU-330   THR-331  8.5 8.6 -1.6 9.8 96.4 97.1 14.5
 THR-331   VAL-332  10.5 10.6 -1.5 9.6 141.8 135.5 144.3
 VAL-332   GLU-333  13.4 13.7 -6.2 13.4 123.4 129.4 142.6
 GLU-333   THR-334  14.0 14.1 -15.5 4.7 84.1 82.8 -61.2
 THR-334   GLY-335  17.7 17.7 2.8 -0.9 146.0 143.1 -51.5
 GLY-335   PRO-336  17.1 17.1 5.5 0.4 29.0 25.9 125.1
 GLY-335   PRO-336  17.1 17.1 5.5 0.4 29.0 25.9 125.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-335   PRO-336  17.1 17.1 5.5 0.4 29.0 25.9 125.1
 GLY-335   PRO-336  17.1 17.1 5.5 0.4 29.0 25.9 125.1
 PRO-336   ILE-337  16.4 16.3 7.1 -9.2 83.0 83.8 9.3
 ILE-337   GLY-338  13.0 13.0 -1.1 9.4 139.2 141.9 143.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-372   VAL-373  1.2 1.2 -0.7 10.7 121.0 118.0 170.8
 VAL-373   CYS-374  2.4 2.5 -12.7 10.4 105.7 110.4 -23.3
 CYS-374   TYR-375  5.3 5.1 -11.5 10.4 111.0 111.9 68.7
 TYR-375   LEU-376  8.7 8.5 3.7 -4.2 129.8 132.1 134.7
 TYR-375   LEU-376  8.7 8.5 3.7 -4.2 129.8 132.1 134.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-375   LEU-376  8.7 8.5 3.7 -4.2 129.8 132.1 134.7
 TYR-375   LEU-376  8.7 8.5 3.7 -4.2 129.8 132.1 134.7
 LEU-376   SER-377  10.3 10.2 2.5 -1.1 120.2 116.4 28.9
 SER-377   PHE-378  13.4 13.3 11.5 -8.2 163.3 162.4 -20.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-379   GLU-380  15.7 15.8 8.2 -4.9 52.2 48.8 70.2
 GLU-380   VAL-381  14.0 14.0 -4.7 4.7 81.1 79.2 10.0
 VAL-381   ASP-382  11.6 11.6 -1.9 4.2 147.6 150.4 85.4
 ASP-382   GLN-383  10.7 10.7 2.1 -2.8 99.4 97.1 -42.4
 GLN-383   HIS-384  11.0 11.2 6.4 -2.4 109.0 108.3 -71.0
 HIS-384   GLY-385  7.6 7.8 -0.3 -4.2 19.3 17.6 128.5
 GLY-385   ASN-386  7.6 7.7 3.8 -2.9 93.3 92.4 -108.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-410   LYS-411  2.8 2.7 3.7 -7.8 77.4 76.1 -42.1
 LYS-411   ILE-412  2.9 2.9 -4.6 5.5 111.9 112.0 128.5
 ILE-412   ILE-413  3.8 3.7 -1.5 -4.6 91.3 90.2 -51.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-447   PRO-448  10.1 10.0 -8.7 5.7 43.2 41.0 62.1
 PRO-448   GLU-449  11.1 11.0 -6.9 4.6 108.8 111.2 36.6
 GLU-449   ILE-450  10.1 10.1 -9.0 9.0 151.7 154.4 62.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-462   ASP-463  4.9 4.8 -1.1 0.7 89.0 87.6 -43.1
 ASP-463   VAL-464  6.2 6.2 4.3 -4.6 79.5 78.9 72.0
 VAL-464   ARG-465  6.2 6.3 -8.1 8.5 83.7 84.0 22.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-475   LYS-476  9.7 9.8 -0.6 6.3 92.0 90.4 -48.0
 LYS-476   GLU-477  11.4 11.5 -0.5 -1.4 20.4 22.6 110.1
 GLU-477   ASP-478  11.8 11.7 -0.6 3.3 38.9 40.7 -87.8
 ASP-478   GLY-479  13.7 13.7 3.0 -8.4 89.0 85.6 0.2
 GLY-479   LEU-480  12.0 12.0 2.3 0.4 26.1 26.1 64.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees