Alpha-Hemolysin Translocation Atp-Binding Protein Hlyb

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-551   ASN-552  6.4 7.3 75.9 11.2 56.9 58.6 215.4
 ASN-552   VAL-553  6.2 5.8 120.6 47.9 47.8 8.4 -970.5
 VAL-553   LEU-554  3.4 6.7 151.7 150.4 30.0 55.4 1541.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-616   ALA-617  4.8 3.6 2.5 6.3 116.0 105.8 14.6
 ALA-617   ARG-618  7.6 6.8 -8.4 3.8 75.1 72.0 13.4
 ARG-618   ALA-619  7.6 6.9 -1.3 -2.5 139.5 138.8 -16.5
 ALA-619   LEU-620  8.4 7.5 -3.4 23.9 105.9 116.5 59.5
 LEU-620   VAL-621  10.8 9.5 -17.3 -7.4 52.3 61.0 174.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-632   THR-633  6.5 3.1 -164.2 -6.1 99.9 94.5 528.3
 THR-633   SER-634  9.7 4.4 19.9 89.2 71.8 109.7 222.4
 SER-634   ALA-635  10.2 7.4 162.7 -15.3 116.8 57.0 102.3
 ALA-635   LEU-636  10.7 9.4 -127.4 -0.5 142.1 107.0 -367.4
 LEU-636   ASP-637  9.6 8.8 -10.0 -12.5 86.4 51.9 54.1
 ASP-637   TYR-638  12.5 11.8 4.5 -6.3 131.6 133.2 -16.7
 TYR-638   GLU-639  14.1 11.8 7.3 -17.0 73.9 77.6 -28.8
 GLU-639   SER-640  13.9 13.3 14.7 -6.4 96.5 54.4 12.8
 SER-640   GLU-641  10.1 10.5 5.4 -2.6 159.7 120.7 -19.6
 GLU-641   HIS-642  9.5 7.8 -2.0 1.3 62.3 56.4 -0.1
 HIS-642   VAL-643  12.4 10.0 -0.6 8.0 104.9 118.9 19.1
 VAL-643   ILE-644  11.8 11.3 5.2 -4.8 118.9 85.7 -18.9
 ILE-644   MET-645  8.4 8.0 0.1 -5.2 164.5 151.3 26.7
 MET-645   ARG-646  9.4 7.4 -0.3 13.3 82.5 69.1 -18.4
 ARG-646   ASN-647  12.8 11.1 -14.4 22.6 103.2 108.7 2.5
 ASN-647   MET-648  11.7 11.6 -7.4 -14.9 59.2 72.3 55.0
 MET-648   HIS-649  9.0 9.2 17.8 1.3 117.8 141.3 -3.1
 HIS-649   LYS-650  11.8 11.7 7.9 -35.9 51.0 64.8 -75.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees