DNA Polymerase Eta

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-93   VAL-94  3.4 4.0 -4.8 1.8 28.2 23.2 27.5
 VAL-94   PHE-95  3.5 3.9 7.4 -3.8 133.4 129.7 -26.5
 PHE-95   LYS-96  1.9 2.2 9.1 -7.3 102.7 103.2 -39.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-99   ASP-100  3.7 3.8 -3.4 4.1 92.7 96.3 -49.7
 ASP-100   PHE-101  3.6 3.6 8.8 -14.6 148.4 149.3 59.1
 PHE-101   TRP-102  4.1 3.8 -10.2 4.7 51.4 51.9 45.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-114   PRO-115  17.0 17.5 -2.5 -3.6 12.5 16.7 77.6
 PRO-115   ALA-116  17.7 18.3 29.2 -25.6 116.8 124.5 -66.0
 ALA-116   LYS-117  15.7 15.9 -19.3 26.0 102.9 99.6 9.4
 LYS-117   GLN-118  12.5 12.8 -15.7 14.7 68.6 68.5 4.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-122   ASP-123  12.9 13.0 4.2 0.4 66.3 65.5 39.6
 ASP-123   HIS-124  9.5 9.7 -9.7 3.4 59.6 60.6 14.9
 HIS-124   LYS-125  7.3 7.7 -8.0 11.6 100.2 99.3 -24.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-394   MET-395  19.3 18.9 33.8 -24.7 37.6 35.8 110.7
 MET-395   MET-396  16.1 15.7 -13.0 15.3 69.6 72.4 57.3
 MET-396   SER-397  14.0 13.8 -14.3 12.5 134.6 132.8 -42.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-428   ASP-429  16.3 16.6 -16.9 10.8 37.1 45.9 55.7
 ASP-429   LEU-430  17.1 17.3 21.4 -15.7 74.1 67.2 15.1
 LEU-430   GLU-431  19.9 19.8 -5.9 7.0 103.0 97.4 29.0
 GLU-431   GLN-432  21.1 21.4 3.0 5.8 144.9 149.3 -93.4
 GLN-432   GLU-433  21.6 22.1 26.7 -28.2 117.5 104.1 -47.8
 GLU-433   TYR-434  22.5 23.6 -5.2 22.4 112.2 120.4 75.0
 TYR-434   ASN-435  25.4 26.1 -15.2 6.8 120.8 93.7 -64.2
 ASN-435   LYS-436  25.8 26.2 -34.7 23.0 165.4 160.3 -143.2
 LYS-436   ILE-437  25.2 26.1 2.8 13.1 61.6 65.9 112.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-500   MET-501  10.9 10.4 -7.5 7.9 124.4 125.3 -51.2
 MET-501   THR-502  9.8 9.5 8.1 -1.5 105.8 106.6 -41.1
 THR-502   ILE-503  13.2 12.8 11.4 -11.0 61.9 64.4 28.4
 ILE-503   THR-504  14.4 14.3 -2.3 1.3 90.0 89.1 8.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees