Mothers Against Decapentaplegic Homolog 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-341   ILE-342  10.3 10.3 9.9 -6.9 86.7 84.0 1.1
 ILE-342   PHE-343  6.9 6.9 8.8 5.5 83.0 83.9 69.4
 PHE-343   ASN-344  5.6 5.7 -35.6 36.6 103.0 114.0 40.3
 ASN-344   ASN-345  8.0 7.8 -12.2 -12.5 82.9 85.5 35.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-369   CYS-370  4.1 3.3 24.5 -13.0 34.0 27.6 73.9
 CYS-370   THR-371  4.0 3.6 3.9 3.6 54.5 52.9 38.3
 THR-371   ILE-372  3.2 3.3 -16.6 3.5 60.8 63.7 63.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-400   ASN-401  3.8 3.7 3.4 -8.6 103.9 99.2 28.5
 ASN-401   GLY-402  6.9 6.9 12.5 -8.9 57.9 61.3 31.2
 GLY-402   PRO-403  9.5 9.4 9.8 -14.3 40.5 35.0 -25.2
 PRO-403   LEU-404  8.4 8.7 4.9 -1.8 102.6 100.3 -1.9
 LEU-404   GLN-405  9.1 9.3 -2.2 0.4 77.0 72.8 -18.1
 GLN-405   TRP-406  12.2 12.3 6.3 0.6 39.0 39.2 60.2
 TRP-406   LEU-407  13.5 13.5 -7.1 2.5 118.9 121.7 -29.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees