D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ALA-102   SER-103  6.2 6.7 11.5 -9.9 117.2 115.6 -29.4  SER-103   ASP-104  3.6 3.9 21.7 -1.6 61.5 61.1 39.3  ASP-104   ASN-105  0.7 0.8 -16.9 -0.2 54.3 53.5 68.4  ASN-105   VAL-106  4.1 4.2 -3.1 4.9 98.0 99.1 -12.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ILE-233   ALA-234  1.9 2.1 -8.3 16.8 82.0 87.1 3.4  ALA-234   GLN-235  2.2 2.1 -14.9 -6.7 30.7 25.3 107.1  GLN-235   LEU-236  4.4 4.3 7.5 -7.8 79.7 85.4 -25.8  LEU-236   PRO-237  7.1 7.2 -8.7 -3.2 58.1 55.0 33.0  PRO-237   ASP-238  10.1 10.0 6.5 -5.4 112.7 111.5 -10.2 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ALA-259   LYS-260  5.8 5.4 -6.4 2.0 4.9 5.0 30.4  LYS-260   TYR-261  4.5 4.4 8.1 -11.3 113.0 110.8 -13.9  TYR-261   PRO-262  5.1 4.8 -41.7 15.5 23.0 16.8 137.2  PRO-262   VAL-263  3.1 2.6 -21.9 39.8 44.8 48.1 -112.4  VAL-263   ASP-264  4.8 4.6 8.5 -5.8 137.8 133.3 13.9  ASP-264   LEU-265  4.7 4.5 6.4 -21.8 143.8 150.0 70.6  LEU-265   LYS-266  2.8 3.0 9.1 -7.6 134.5 130.3 -36.3  LYS-266   LEU-267  4.3 4.1 -1.9 -4.6 48.3 49.6 22.5  LEU-267   VAL-268  4.6 4.6 -13.8 10.2 30.8 23.2 1.1  VAL-268   VAL-269  3.1 3.4 2.7 -5.4 135.0 131.9 10.1  VAL-269   LYS-270  5.3 5.7 7.0 -7.5 153.3 150.7 6.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees