D-Mandelate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-108   SER-109  1.7 1.6 -10.4 5.9 28.5 25.6 56.2
 SER-109   ARG-110  2.7 2.5 7.4 -3.8 109.7 104.7 10.7
 ARG-110   GLY-111  6.3 6.2 -2.7 -0.1 44.3 37.4 9.8
 GLY-111   ALA-112  8.2 8.0 4.2 -17.2 148.2 146.4 92.8
 ALA-112   GLY-113  5.1 5.0 21.9 -6.2 132.6 125.9 -78.7
 GLY-113   ASP-114  7.0 7.0 -29.1 12.2 86.3 77.1 19.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-313   HIS-314  2.2 2.4 0.3 -0.1 87.4 86.9 9.7
 HIS-314   GLU-315  2.7 2.7 -4.1 -1.3 39.0 37.2 30.6
 GLU-315   PHE-316  3.0 2.9 1.9 -9.2 156.5 152.2 21.7
 PHE-316   GLU-317  1.5 1.4 6.2 -5.1 100.2 96.9 23.7
 GLU-317   ARG-318  5.2 5.1 -0.4 -0.8 83.3 81.1 -23.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees