Alcohol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-92   PHE-93  7.6 8.0 7.6 -6.8 113.5 113.5 28.9
 PHE-93   THR-94  8.3 8.4 14.2 -26.6 165.5 171.3 166.3
 THR-94   PRO-95  6.5 7.0 11.7 -10.8 103.6 96.3 -59.4
 PRO-95   GLN-96  8.5 8.8 7.4 -2.8 53.4 50.8 42.9
 PRO-95   GLN-96  8.5 8.8 7.4 -2.8 53.4 50.8 42.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-95   GLN-96  8.5 8.8 7.4 -2.8 53.4 50.8 42.9
 PRO-95   GLN-96  8.5 8.8 7.4 -2.8 53.4 50.8 42.9
 GLN-96   CYS-97  8.4 8.6 -0.8 -0.6 115.3 114.8 30.9
 CYS-97   GLY-98  11.4 11.6 5.9 -0.5 61.3 60.6 73.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-107   GLY-108  4.7 4.8 -20.5 33.7 112.1 115.7 106.8
 GLY-108   ASN-109  1.0 1.0 -15.3 10.4 146.5 142.0 -12.8
 ASN-109   PHE-110  1.2 1.2 4.2 2.2 78.8 83.6 62.3
 PHE-110   CYS-111  4.3 4.5 7.5 2.3 122.0 125.2 -96.6
 CYS-111   LEU-112  6.5 6.7 6.3 -0.3 104.5 111.3 -20.1
 LEU-112   LYS-113  9.3 9.4 -8.2 4.1 117.2 120.5 -43.2
 LYS-113   ASN-114  11.9 12.0 0.5 0.9 36.6 36.4 43.4
 LEU-116   SER-117  12.9 13.9 153.7 -43.9 135.9 65.4 -384.5
 SER-117   MET-118  13.8 13.9 -108.0 79.3 87.0 116.5 -272.7
 MET-118   PRO-119  17.2 16.8 -125.5 -14.2 133.8 72.9 886.5
 PRO-119   ARG-120  17.8 19.7 -148.0 8.8 84.8 94.0 415.1
 ARG-120   GLY-121  20.3 19.0 89.3 -133.4 23.1 26.1 -667.2
 GLY-121   THR-122  19.9 20.1 1.3 -9.5 84.6 85.6 -13.6
 THR-122   MET-123  20.7 20.6 -3.1 -6.9 87.1 88.3 -13.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-175   PHE-176  4.9 4.8 4.6 0.3 99.1 97.9 50.3
 PHE-176   SER-177  4.3 4.4 -1.5 3.0 18.5 18.2 -8.2
 SER-177   THR-178  3.2 3.3 -6.9 1.5 51.2 47.9 6.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-291   SER-292  13.6 14.0 -34.8 24.7 72.1 62.2 120.3
 SER-292   GLY-293  11.0 11.7 -25.2 59.9 66.6 64.1 -203.4
 GLY-293   VAL-294  13.1 14.0 36.0 42.4 53.2 54.1 675.3
 VAL-294   PRO-295  15.3 14.9 9.9 -23.1 107.5 89.5 88.0
 PRO-295   PRO-296  17.3 18.5 29.8 -9.9 39.0 97.7 73.7
 PRO-296   ASP-297  17.8 21.3 173.7 40.4 70.6 33.9 -1512.0
 ASP-297   SER-298  21.4 21.8 117.0 115.7 71.8 46.8 2010.3
 SER-298   GLN-299  21.2 23.5 -103.9 -48.3 140.1 93.3 -697.9
 GLN-299   ASN-300  24.1 24.3 -62.2 -5.1 128.6 124.0 -451.8
 ASN-300   LEU-301  23.7 23.7 20.0 -13.6 112.7 111.5 -11.2
 LEU-301   SER-302  24.0 24.1 -5.8 1.1 140.3 145.7 -50.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-317   ILE-318  7.1 7.5 -8.3 -0.1 41.4 40.1 42.5
 ILE-318   PHE-319  5.7 5.8 -5.1 -4.6 66.9 65.0 92.8
 PHE-319   GLY-320  2.9 3.2 2.2 -1.0 81.7 77.8 -27.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-333   ASP-334  12.8 12.7 7.6 -1.2 75.3 80.3 9.1
 ASP-334   PHE-335  12.6 12.3 -2.8 1.5 159.9 157.3 -6.6
 PHE-335   MET-336  10.5 10.2 2.2 0.9 49.5 48.9 31.6
 MET-336   ALA-337  13.0 12.8 2.5 -8.2 89.0 89.8 -1.5
 ALA-337   LYS-338  15.8 15.5 0.1 -4.0 66.9 74.3 -20.2
 LYS-338   LYS-339  14.6 14.1 11.9 -12.0 127.5 134.7 49.0
 LYS-339   PHE-340  14.5 14.1 12.0 3.4 78.3 86.3 -31.3
 PHE-340   ALA-341  11.9 11.4 2.1 -2.5 39.3 28.4 1.9
 ALA-341   LEU-342  9.7 9.6 -7.7 0.4 80.2 83.6 37.4
 LEU-342   ASP-343  6.2 6.0 -3.7 -8.0 144.9 148.2 -119.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees