Glutamate Receptor, Ionotropic Kainate 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  3.0 3.3 14.0 -12.4 41.4 41.9 -7.7
 LEU-108   GLY-109  0.4 0.8 6.8 -33.1 118.6 116.4 57.3
 GLY-109   VAL-110  4.1 4.1 12.9 -1.9 41.8 42.0 17.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-211   SER-212  7.4 7.2 -3.7 11.6 82.2 85.7 -4.3
 SER-212   LYS-213  3.7 3.5 -1.4 16.8 111.2 98.0 45.7
 LYS-213   GLY-214  2.8 2.4 -2.3 -19.8 67.3 76.9 23.5
 GLY-214   TYR-215  4.1 3.7 -27.5 6.9 68.8 73.6 0.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-248   TRP-249  13.3 13.4 -7.0 9.4 120.4 121.2 -5.7
 TRP-249   TRP-250  10.5 10.4 -2.9 -5.7 102.7 104.4 -19.0
 TRP-250   ARG-251  7.8 7.8 -43.5 -167.6 131.8 125.3 370.8
 ARG-251   GLY-252  10.1 10.5 89.0 112.8 102.9 49.5 -763.3
 GLY-252   SER-253  9.6 13.4 178.8 -45.2 62.9 36.5 456.4
 SER-253   GLY-254  10.2 11.0 -126.5 39.6 76.8 106.5 -1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees