D-Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-45   TYR-46  7.0 6.9 1.2 -0.6 107.6 107.5 33.7
 TYR-46   ASP-47  8.7 8.7 -4.6 3.2 13.2 13.7 37.8
 ASP-47   SER-48  9.2 9.1 2.4 -3.0 100.8 100.3 101.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-49   HIS-50  10.2 10.2 0.5 1.4 101.0 101.8 130.3
 HIS-50   GLY-51  6.8 6.7 2.3 -3.8 160.8 160.2 -18.5
 GLY-51   ARG-52  7.2 7.2 5.1 -4.2 122.0 121.5 -29.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-148   CYS-149  8.7 8.5 -1.0 0.9 104.3 103.4 36.9
 CYS-149   THR-150  6.3 6.1 -1.0 0.6 39.2 39.6 7.0
 THR-150   THR-151  6.9 6.7 -4.3 4.2 46.7 46.0 -26.6
 THR-151   ASN-152  5.3 5.2 -0.5 1.0 110.2 109.1 82.0
 ASN-152   CYS-153  2.6 2.6 2.6 -4.4 96.8 95.9 -67.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-311   ASP-312  6.2 6.2 -1.9 0.0 37.6 37.1 90.3
 ASP-312   ASN-313  6.0 6.0 -2.3 1.3 102.2 102.7 -82.6
 ASN-313   GLU-314  6.6 6.5 5.9 -6.1 132.9 131.6 48.4
 GLU-314   THR-315  5.9 5.8 0.9 3.6 100.4 100.3 -31.6
 THR-315   GLY-316  2.3 2.1 -4.9 5.4 136.9 135.8 10.1
 GLY-316   TYR-317  0.5 0.3 -8.3 7.0 106.7 104.5 -19.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees