Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-108   GLY-109  9.1 9.0 -5.0 9.9 136.3 133.9 1.5
 GLY-109   ILE-110  6.5 6.5 -40.3 30.3 71.9 74.1 34.5
 ILE-110   SER-111  4.1 3.6 1.8 -7.6 137.3 132.1 83.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-117   THR-118  14.6 13.8 -43.7 24.1 48.5 52.8 -8.6
 THR-118   PRO-119  16.3 15.8 -1.6 -7.6 57.8 64.3 104.2
 PRO-119   ILE-120  18.5 18.1 5.9 7.1 137.4 151.1 -108.1
 ILE-120   ASP-121  15.5 15.7 3.9 2.0 82.6 87.1 -23.7
 ASP-121   SER-122  14.7 14.8 -2.9 0.9 35.2 33.4 17.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-190   SER-191  2.1 2.3 19.4 -10.1 24.2 20.5 98.3
 SER-191   THR-192  3.9 3.9 4.4 8.8 45.8 50.2 117.2
 THR-192   SER-193  5.7 5.9 -2.7 -5.4 119.4 117.3 -58.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-197   THR-198  3.3 3.2 -7.1 -16.0 44.7 43.0 187.5
 THR-198   GLN-199  0.0 0.1 13.8 3.9 151.4 145.6 -164.3
 GLN-199   ARG-200  2.8 2.9 -18.8 19.2 58.9 55.3 0.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-205   GLN-206  5.8 5.7 -2.1 22.8 12.7 5.0 -178.7
 GLN-206   ILE-207  5.8 6.0 19.6 -2.0 102.5 96.0 36.3
 ILE-207   GLY-208  9.2 9.3 -9.2 -17.5 32.1 40.4 241.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees