Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  7.7 8.0 -7.4 6.0 102.3 105.0 8.6
 LEU-109   GLY-110  4.9 5.2 -8.1 17.9 175.1 175.8 93.8
 GLY-110   ILE-111  3.9 4.1 9.6 -8.5 77.6 76.3 -8.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-192   GLU-193  7.3 7.5 -5.8 -3.5 110.2 112.7 -66.3
 GLU-193   SER-194  5.2 5.7 -9.2 8.3 112.5 118.5 1.1
 SER-194   THR-195  1.7 2.2 10.2 -3.5 7.5 6.4 71.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-198   TYR-199  4.5 4.3 -20.3 12.1 20.8 26.9 83.3
 TYR-199   ILE-200  5.1 5.4 -8.8 8.8 85.8 90.4 59.6
 ILE-200   GLU-201  8.8 9.0 -4.5 -1.3 91.4 94.2 28.2
 GLU-201   GLN-202  9.1 9.4 2.8 -3.8 153.8 151.8 5.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  1.3 1.9 -6.4 4.2 85.7 85.7 10.7
 ASP-216   SER-217  4.9 5.5 -3.1 -2.3 154.2 158.9 -48.4
 SER-217   LYS-218  7.4 7.8 14.8 -32.7 68.6 73.9 -103.9
 LYS-218   GLY-219  9.1 9.9 -10.4 25.1 155.1 173.8 152.8
 GLY-219   TYR-220  10.5 10.7 37.1 -21.2 56.8 61.3 50.9
 TYR-220   GLY-221  11.6 11.8 -11.4 19.3 114.1 117.7 15.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-252   LYS-253  4.5 4.3 -7.8 8.1 41.0 40.6 -14.0
 LYS-253   TRP-254  2.3 2.3 -4.7 8.2 104.0 106.4 32.5
 TRP-254   TRP-255  1.2 1.2 -9.5 8.2 141.0 140.2 5.4
 TRP-255   TYR-256  2.5 2.5 -2.8 6.2 81.1 79.2 -19.4
 TYR-256   ASP-257  5.6 5.4 -1.7 -7.9 18.9 21.7 82.0
 ASP-257   LYS-258  5.8 5.8 12.1 -11.2 102.5 107.5 -18.9
 LYS-258   GLY-259  5.8 5.6 10.9 -14.0 42.9 45.0 -22.2
 GLY-259   GLU-260  8.1 8.0 -3.3 9.2 71.7 68.3 -12.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees