Atp-Dependent RNA Helicase Ddx3x

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-403   ALA-404  9.1 9.1 5.6 -7.8 24.3 24.6 -1.9
 ALA-404   VAL-405  9.4 9.2 -11.6 -10.0 128.6 127.6 -4.6
 VAL-405   GLY-406  9.0 9.0 -21.4 161.1 151.3 159.5 74.5
 THR-411   SER-412  8.0 11.4 24.3 161.8 89.4 25.2 65.8
 SER-412   GLU-413  8.4 11.2 120.8 36.5 17.0 44.1 -99.2
 GLU-413   ASN-414  8.2 8.1 123.5 147.4 47.6 65.4 161.0
 ASN-414   ILE-415  6.5 6.4 21.7 -17.8 57.1 75.7 1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees