Glutamate Receptor Ionotropic, Delta-2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-104   TYR-105  4.9 5.6 20.0 -56.5 107.9 119.1 51.9
 TYR-105   SER-106  3.4 3.9 3.5 3.0 74.1 49.5 36.4
 SER-106   VAL-107  1.8 3.0 19.5 20.4 111.8 123.3 -80.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-194   ALA-195  4.6 5.3 -6.7 9.4 98.5 93.8 53.0
 ALA-195   ALA-196  4.3 3.8 -5.4 7.6 131.9 136.2 0.4
 ALA-196   VAL-197  2.4 1.1 -1.6 -7.5 161.4 157.1 -40.4
 VAL-197   LEU-198  2.6 2.9 -1.2 3.9 77.7 86.5 -16.1
 VAL-197   LEU-198  2.6 2.9 -1.2 3.9 77.7 86.5 -16.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-197   LEU-198  2.6 2.9 -1.2 3.9 77.7 86.5 -16.1
 VAL-197   LEU-198  2.6 2.9 -1.2 3.9 77.7 86.5 -16.1
 LEU-198   GLU-199  6.3 6.1 -4.5 5.6 85.2 88.8 1.9
 GLU-199   TYR-200  7.1 6.1 -3.2 -1.3 23.3 21.5 20.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-212   VAL-213  11.7 11.2 10.1 0.3 157.5 167.5 -12.3
 VAL-213   GLY-214  11.0 11.1 6.7 -28.7 105.9 108.6 61.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees