Serum Transferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-84   TYR-85  4.3 4.5 11.2 -19.7 70.6 68.2 -7.9
 TYR-85   GLY-86  2.0 1.8 -5.7 -11.9 130.5 122.1 -13.3
 GLY-86   SER-87  2.3 1.9 0.7 14.3 14.2 22.5 20.8
 SER-87   LYS-88  1.0 1.3 15.6 -15.2 80.8 90.7 13.4
 LYS-88   GLU-89  2.4 4.4 -5.6 -2.6 105.0 89.2 -8.5
 GLU-89   ASP-90  3.5 6.4 -15.8 25.0 39.2 17.6 -21.2
 ASP-90   PRO-91  4.8 6.1 -3.9 -18.0 37.0 57.7 33.3
 PRO-91   GLN-92  3.5 4.1 -6.6 19.1 25.3 12.2 -19.6
 GLN-92   THR-93  3.1 3.0 5.1 -20.8 131.9 118.7 14.3
 THR-93   PHE-94  4.2 4.2 -55.5 35.6 25.3 18.6 32.5
 PHE-94   TYR-95  2.2 3.4 -5.9 20.0 100.9 90.9 2.5
 TYR-95   TYR-96  2.4 3.1 -13.9 -19.5 39.6 41.4 46.8
 TYR-96   ALA-97  5.6 6.1 -2.9 0.7 53.6 50.4 -3.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-242   LEU-243  11.2 11.3 1.5 6.8 29.4 25.9 2.4
 LEU-243   ALA-244  9.2 9.2 4.4 3.9 94.1 95.7 -1.5
 ALA-244   GLN-245  6.7 7.0 -28.0 9.4 31.0 17.6 30.3
 GLN-245   VAL-246  5.0 6.7 -32.7 24.7 114.3 95.8 -10.8
 VAL-246   PRO-247  1.8 3.7 -33.9 1.7 42.0 36.1 38.0
 PRO-247   SER-248  3.7 4.7 -22.5 4.2 69.1 91.2 5.6
 SER-248   HIS-249  4.3 3.7 139.1 -78.6 63.1 84.3 29.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees