Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  7.6 7.4 9.9 10.5 38.0 39.4 58.5
 THR-107   LEU-108  5.6 5.0 4.5 0.4 113.5 115.7 -40.3
 LEU-108   GLY-109  2.6 1.5 -5.7 17.0 138.1 141.5 28.3
 GLY-109   ILE-110  2.8 2.5 -9.9 -10.6 61.0 66.9 41.0
 ILE-110   SER-111  5.7 5.6 0.0 -0.9 72.3 76.1 5.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-210   ILE-211  7.7 7.5 5.3 -3.9 149.8 158.3 -25.7
 ILE-211   ASP-212  7.9 7.6 14.2 -27.5 134.5 129.1 60.8
 ASP-212   SER-213  4.5 4.1 -7.3 2.1 112.3 121.4 -8.0
 SER-213   LYS-214  2.5 2.3 -7.3 3.8 84.7 78.8 13.3
 LYS-214   GLY-215  2.4 2.5 24.6 -14.5 38.9 35.9 25.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees